Human Gene SKOR1 (uc031qsn.1) Description and Page Index
  Description: Homo sapiens SKI family transcriptional corepressor 1 (SKOR1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr15:68,112,042-68,126,174 Size: 14,133 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr15:68,112,042-68,126,174 Size: 14,133 Coding Exon Count: 15 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr15:68,112,042-68,126,174)mRNA (may differ from genome)Protein (868 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
LynxMGIPubMedStanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.43 RPKM in Brain - Cerebellum
Total median expression: 19.79 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  Protein Domain and Structure Information
  Pfam Domains:
PF02437 - SKI/SNO/DAC family
PF08782 - c-SKI Smad4 binding domain

SCOP Domains:
46955 - Putative DNA-binding domain
63763 - SAND domain-like

ModBase Predicted Comparative 3D Structure on P84550-2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 Protein SequenceProtein Sequence   

-  Descriptions from all associated GenBank mRNAs
  LP895982 - Sequence 846 from Patent EP3253886.
AY669507 - Homo sapiens functional smad suppressing element 15 (FUSSEL15) mRNA, complete cds.
LF213155 - JP 2014500723-A/20658: Polycomb-Associated Non-Coding RNAs.
LF208539 - JP 2014500723-A/16042: Polycomb-Associated Non-Coding RNAs.
LF212285 - JP 2014500723-A/19788: Polycomb-Associated Non-Coding RNAs.
BC168376 - Synthetic construct Homo sapiens clone IMAGE:100068272, MGC:195889 LBXCOR1 homolog (mouse) (LBXCOR1) mRNA, encodes complete protein.
LF377449 - JP 2014500723-A/184952: Polycomb-Associated Non-Coding RNAs.
LF208540 - JP 2014500723-A/16043: Polycomb-Associated Non-Coding RNAs.
LF377445 - JP 2014500723-A/184948: Polycomb-Associated Non-Coding RNAs.
MA448732 - JP 2018138019-A/20658: Polycomb-Associated Non-Coding RNAs.
MA444116 - JP 2018138019-A/16042: Polycomb-Associated Non-Coding RNAs.
MA447862 - JP 2018138019-A/19788: Polycomb-Associated Non-Coding RNAs.
MA613026 - JP 2018138019-A/184952: Polycomb-Associated Non-Coding RNAs.
MA444117 - JP 2018138019-A/16043: Polycomb-Associated Non-Coding RNAs.
MA613022 - JP 2018138019-A/184948: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: CORL1, FUSSEL15, LBXCOR1, NM_001258024, NP_001244953, P84550-2, uc002aqy.1
UCSC ID: uc031qsn.1
RefSeq Accession: NM_001258024
Protein: P84550-2, splice isoform of P84550 CCDS: CCDS58374.1

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: NM_001258024.1
exon count: 15CDS single in 3' UTR: no RNA size: 2607
ORF size: 2607CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 5116.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.