Human Gene SKOR1 (uc031qsn.1) Description and Page Index
  Description: Homo sapiens SKI family transcriptional corepressor 1 (SKOR1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr15:68,112,042-68,126,174 Size: 14,133 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr15:68,112,042-68,126,174 Size: 14,133 Coding Exon Count: 15 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:68,112,042-68,126,174)mRNA (may differ from genome)Protein (868 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblExonPrimerGeneCardsHGNC
LynxMGIPubMedStanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.43 RPKM in Brain - Cerebellum
Total median expression: 19.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  Protein Domain and Structure Information
  Pfam Domains:
PF02437 - SKI/SNO/DAC family
PF08782 - c-SKI Smad4 binding domain

SCOP Domains:
46955 - Putative DNA-binding domain
63763 - SAND domain-like

ModBase Predicted Comparative 3D Structure on P84550-2
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Descriptions from all associated GenBank mRNAs
  LP895982 - Sequence 846 from Patent EP3253886.
AY669507 - Homo sapiens functional smad suppressing element 15 (FUSSEL15) mRNA, complete cds.
LF213155 - JP 2014500723-A/20658: Polycomb-Associated Non-Coding RNAs.
LF208539 - JP 2014500723-A/16042: Polycomb-Associated Non-Coding RNAs.
LF212285 - JP 2014500723-A/19788: Polycomb-Associated Non-Coding RNAs.
BC168376 - Synthetic construct Homo sapiens clone IMAGE:100068272, MGC:195889 LBXCOR1 homolog (mouse) (LBXCOR1) mRNA, encodes complete protein.
LF377449 - JP 2014500723-A/184952: Polycomb-Associated Non-Coding RNAs.
LF208540 - JP 2014500723-A/16043: Polycomb-Associated Non-Coding RNAs.
LF377445 - JP 2014500723-A/184948: Polycomb-Associated Non-Coding RNAs.
MA448732 - JP 2018138019-A/20658: Polycomb-Associated Non-Coding RNAs.
MA444116 - JP 2018138019-A/16042: Polycomb-Associated Non-Coding RNAs.
MA447862 - JP 2018138019-A/19788: Polycomb-Associated Non-Coding RNAs.
MA613026 - JP 2018138019-A/184952: Polycomb-Associated Non-Coding RNAs.
MA444117 - JP 2018138019-A/16043: Polycomb-Associated Non-Coding RNAs.
MA613022 - JP 2018138019-A/184948: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: CORL1, FUSSEL15, LBXCOR1, NM_001258024, NP_001244953, P84550-2, uc002aqy.1
UCSC ID: uc031qsn.1
RefSeq Accession: NM_001258024
Protein: P84550-2, splice isoform of P84550 CCDS: CCDS58374.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001258024.1
exon count: 15CDS single in 3' UTR: no RNA size: 2607
ORF size: 2607CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 5116.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.