Human Gene SKOR1 (uc031qsn.1)
Description: Homo sapiens SKI family transcriptional corepressor 1 (SKOR1), mRNA.Transcript (Including UTRs) Position: hg19 chr15:68,112,042-68,126,174 Size: 14,133 Total Exon Count: 15 Strand: +Coding Region Position: hg19 chr15:68,112,042-68,126,174 Size: 14,133 Coding Exon Count: 15
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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Protein Domain and Structure Information
Pfam Domains: PF02437 - SKI/SNO/DAC familyPF08782 - c-SKI Smad4 binding domainSCOP Domains: 46955 - Putative DNA-binding domain63763 - SAND domain-likeModBase Predicted Comparative 3D Structure on P84550-2 The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
LP895982 - Sequence 846 from Patent EP3253886.AY669507 - Homo sapiens functional smad suppressing element 15 (FUSSEL15) mRNA, complete cds.LF213155 - JP 2014500723-A/20658: Polycomb-Associated Non-Coding RNAs.LF208539 - JP 2014500723-A/16042: Polycomb-Associated Non-Coding RNAs.LF212285 - JP 2014500723-A/19788: Polycomb-Associated Non-Coding RNAs.BC168376 - Synthetic construct Homo sapiens clone IMAGE:100068272, MGC:195889 LBXCOR1 homolog (mouse) (LBXCOR1) mRNA, encodes complete protein.LF377449 - JP 2014500723-A/184952: Polycomb-Associated Non-Coding RNAs.LF208540 - JP 2014500723-A/16043: Polycomb-Associated Non-Coding RNAs.LF377445 - JP 2014500723-A/184948: Polycomb-Associated Non-Coding RNAs.MA448732 - JP 2018138019-A/20658: Polycomb-Associated Non-Coding RNAs.MA444116 - JP 2018138019-A/16042: Polycomb-Associated Non-Coding RNAs.MA447862 - JP 2018138019-A/19788: Polycomb-Associated Non-Coding RNAs.MA613026 - JP 2018138019-A/184952: Polycomb-Associated Non-Coding RNAs.MA444117 - JP 2018138019-A/16043: Polycomb-Associated Non-Coding RNAs.MA613022 - JP 2018138019-A/184948: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: CORL1, FUSSEL15, LBXCOR1, NM_001258024, NP_001244953, P84550-2, uc002aqy.1UCSC ID: uc031qsn.1RefSeq Accession: NM_001258024 Protein: P84550-2 , splice isoform of P84550
CCDS: CCDS58374.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001258024.1
exon count:
15 CDS single in 3' UTR:
no
RNA size:
2607 ORF size:
2607 CDS single in intron:
no
Alignment % ID:
100.00 txCdsPredict score:
5116.00 frame shift in genome:
no
% Coverage:
100.00 has start codon:
yes
stop codon in genome:
no
# of Alignments:
1 has end codon:
yes
retained intron:
no
# AT/AC introns
0 selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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US Server
