Human Gene SMA5 (uc021yac.1) Description and Page Index
  Description: Homo sapiens glucuronidase, beta pseudogene (SMA5), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr5:69,776,870-69,881,549 Size: 104,680 Total Exon Count: 11 Strand: -


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:69,776,870-69,881,549)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerH-INVLynxPubMed
Stanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.12 RPKM in Testis
Total median expression: 8.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK289851 - Homo sapiens cDNA FLJ78390 complete cds.
BC067830 - Homo sapiens glucuronidase, beta pseudogene, mRNA (cDNA clone IMAGE:5299741).
AK097091 - Homo sapiens cDNA FLJ39772 fis, clone SPLEN2001157, highly similar to H.sapiens SMA4 mRNA.
AK315849 - Homo sapiens cDNA, FLJ79498 complete cds, highly similar to Beta-glucuronidase-like protein SMA3.
AK289832 - Homo sapiens cDNA FLJ77918 complete cds, highly similar to Homo sapiens SMA3, mRNA.
AK289965 - Homo sapiens cDNA FLJ75287 complete cds, highly similar to Homo sapiens SMA3, mRNA.
L40518 - Homo sapiens (clone DR1) mRNA fragment.
BC141845 - Homo sapiens glucuronidase, beta pseudogene, mRNA (cDNA clone IMAGE:8860320).
X83299 - H.sapiens SMA3 mRNA.
BC050737 - Homo sapiens glucuronidase, beta pseudogene, mRNA (cDNA clone IMAGE:6140465).
X83301 - H.sapiens SMA5 mRNA.
BC070286 - Homo sapiens cDNA clone IMAGE:4806820, partial cds.
JD219965 - Sequence 200989 from Patent EP1572962.
JD517906 - Sequence 498930 from Patent EP1572962.
JD113366 - Sequence 94390 from Patent EP1572962.
JD366667 - Sequence 347691 from Patent EP1572962.
JD366666 - Sequence 347690 from Patent EP1572962.
JD366668 - Sequence 347692 from Patent EP1572962.
JD401618 - Sequence 382642 from Patent EP1572962.
JD322959 - Sequence 303983 from Patent EP1572962.
JD307080 - Sequence 288104 from Patent EP1572962.
JD434907 - Sequence 415931 from Patent EP1572962.
JD529701 - Sequence 510725 from Patent EP1572962.
JD430469 - Sequence 411493 from Patent EP1572962.
JD401617 - Sequence 382641 from Patent EP1572962.
JD401616 - Sequence 382640 from Patent EP1572962.
JD434906 - Sequence 415930 from Patent EP1572962.
JD449416 - Sequence 430440 from Patent EP1572962.
JD179049 - Sequence 160073 from Patent EP1572962.
JD208853 - Sequence 189877 from Patent EP1572962.
JD275777 - Sequence 256801 from Patent EP1572962.
JD557163 - Sequence 538187 from Patent EP1572962.
JD564037 - Sequence 545061 from Patent EP1572962.
JD446409 - Sequence 427433 from Patent EP1572962.
JD533746 - Sequence 514770 from Patent EP1572962.
JD246826 - Sequence 227850 from Patent EP1572962.
JD413329 - Sequence 394353 from Patent EP1572962.
JD198039 - Sequence 179063 from Patent EP1572962.
JD271421 - Sequence 252445 from Patent EP1572962.
JD231034 - Sequence 212058 from Patent EP1572962.
JD246825 - Sequence 227849 from Patent EP1572962.
JD246824 - Sequence 227848 from Patent EP1572962.
JD246822 - Sequence 227846 from Patent EP1572962.
JD098837 - Sequence 79861 from Patent EP1572962.
JD042394 - Sequence 23418 from Patent EP1572962.
JD175485 - Sequence 156509 from Patent EP1572962.
DQ596684 - Homo sapiens piRNA piR-34750, complete sequence.
DQ570308 - Homo sapiens piRNA piR-30420, complete sequence.
JD312486 - Sequence 293510 from Patent EP1572962.
L40519 - Homo sapiens (clone DR2) mRNA fragment.
JD268451 - Sequence 249475 from Patent EP1572962.
DQ583004 - Homo sapiens piRNA piR-50116, complete sequence.
JD045900 - Sequence 26924 from Patent EP1572962.
X83300 - H.sapiens SMA4 mRNA.
BC104473 - Homo sapiens similar to SMA4, mRNA (cDNA clone IMAGE:40033924).
L40519 - Homo sapiens (clone DR2) mRNA fragment.
JD268451 - Sequence 249475 from Patent EP1572962.
DQ583004 - Homo sapiens piRNA piR-50116, complete sequence.
JD045900 - Sequence 26924 from Patent EP1572962.
JD111125 - Sequence 92149 from Patent EP1572962.
JD449805 - Sequence 430829 from Patent EP1572962.
JD477300 - Sequence 458324 from Patent EP1572962.
JD061968 - Sequence 42992 from Patent EP1572962.
JD511415 - Sequence 492439 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_034021
UCSC ID: uc021yac.1
RefSeq Accession: NR_034021

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_034021.1
exon count: 11CDS single in 3' UTR: no RNA size: 1759
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 57.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.