Human Gene 5S_rRNA (uc021vzi.1) Description and Page Index
  Description: Rfam model RF00001 hit found at contig region AC133528.4/126976-126869
Transcript (Including UTRs)
   Position: hg19 chr2:242,524,383-242,524,490 Size: 108 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:242,524,383-242,524,490)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
PubMed

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.07 RPKM in Brain - Cerebellum
Total median expression: 13.20 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  JC506668 - Sequence 36 from Patent EP2733220.
JC737780 - Sequence 36 from Patent WO2014075939.

-  Other Names for This Gene
  UCSC ID: uc021vzi.1

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: RF00001;Alias=5S_rRNA;Note=AC133528.4/126976-126869
exon count: 1CDS single in 3' UTR: no RNA size: 108
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 0.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.