Human Gene NKAPP1 (uc004esm.3) Description and Page Index
  Description: Homo sapiens NFKB activating protein pseudogene 1 (NKAPP1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chrX:119,370,309-119,379,122 Size: 8,814 Total Exon Count: 3 Strand: -

Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chrX:119,370,309-119,379,122)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerH-INVHGNCLynx
PubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.58 RPKM in Pituitary
Total median expression: 10.96 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AK093895 - Homo sapiens cDNA FLJ36576 fis, clone TRACH2012497.
AX748357 - Sequence 1882 from Patent EP1308459.
BC022359 - Homo sapiens chromosome X open reading frame 42, mRNA (cDNA clone IMAGE:4685559).
JD274399 - Sequence 255423 from Patent EP1572962.
JD385686 - Sequence 366710 from Patent EP1572962.
JD055994 - Sequence 37018 from Patent EP1572962.
JD090135 - Sequence 71159 from Patent EP1572962.
JD276629 - Sequence 257653 from Patent EP1572962.
JD358513 - Sequence 339537 from Patent EP1572962.
JD204455 - Sequence 185479 from Patent EP1572962.
JD215523 - Sequence 196547 from Patent EP1572962.
JD039101 - Sequence 20125 from Patent EP1572962.
JD195442 - Sequence 176466 from Patent EP1572962.
JD537616 - Sequence 518640 from Patent EP1572962.
JD354388 - Sequence 335412 from Patent EP1572962.
JD171378 - Sequence 152402 from Patent EP1572962.
BC113730 - Homo sapiens chromosome X open reading frame 42, mRNA (cDNA clone IMAGE:8322782).
BC113732 - Homo sapiens chromosome X open reading frame 42, mRNA (cDNA clone IMAGE:8322784).
JD077889 - Sequence 58913 from Patent EP1572962.
JD109219 - Sequence 90243 from Patent EP1572962.
JD384412 - Sequence 365436 from Patent EP1572962.
JD531893 - Sequence 512917 from Patent EP1572962.
JD317370 - Sequence 298394 from Patent EP1572962.
JD037305 - Sequence 18329 from Patent EP1572962.
JD063804 - Sequence 44828 from Patent EP1572962.
JD440647 - Sequence 421671 from Patent EP1572962.
JD436263 - Sequence 417287 from Patent EP1572962.
JD052875 - Sequence 33899 from Patent EP1572962.
JD390275 - Sequence 371299 from Patent EP1572962.
JD142871 - Sequence 123895 from Patent EP1572962.
JD184785 - Sequence 165809 from Patent EP1572962.
JD048619 - Sequence 29643 from Patent EP1572962.
JD346052 - Sequence 327076 from Patent EP1572962.
BX537594 - Homo sapiens mRNA; cDNA DKFZp686B1195 (from clone DKFZp686B1195).
KJ900924 - Synthetic construct Homo sapiens clone ccsbBroadEn_10318 NKAPP1 gene, encodes complete protein.
JD063384 - Sequence 44408 from Patent EP1572962.
JD134007 - Sequence 115031 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_027131
UCSC ID: uc004esm.3
RefSeq Accession: NR_027131

-  Gene Model Information
category: noncoding nonsense-mediated-decay: no RNA accession: NR_027131.1
exon count: 3CDS single in 3' UTR: no RNA size: 2434
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 443.00frame shift in genome: no % Coverage: 99.42
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.