Human Gene ST7-AS1 (uc003vim.4) Description and Page Index
  Description: Homo sapiens ST7 antisense RNA 1 (ST7-AS1), antisense RNA.
Transcript (Including UTRs)
   Position: hg19 chr7:116,592,501-116,594,388 Size: 1,888 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr7:116,593,396-116,593,683 Size: 288 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:116,592,501-116,594,388)mRNA (may differ from genome)Protein (95 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsGeneNetworkHGNC
LynxMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.55 RPKM in Thyroid
Total median expression: 84.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -377.50705-0.535 Picture PostScript Text
3' UTR -239.90895-0.268 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AF400039 - Homo sapiens ST7OT1 mRNA, non-coding transcript.
DJ031135 - Gene marker which use for analyse sensitivity to treatment cancer with anti-tumor agent combined with radiotheraphy.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_002330, uc003vim.3
UCSC ID: uc003vim.4
RefSeq Accession: NR_002330

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_002330.1
exon count: 1CDS single in 3' UTR: no RNA size: 1908
ORF size: 288CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 635.00frame shift in genome: no % Coverage: 98.95
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.