Human Gene AL832378 (uc003hvd.3) Description and Page Index
  Description: Homo sapiens mRNA; cDNA DKFZp451K177 (from clone DKFZp451K177).
Transcript (Including UTRs)
   Position: hg19 chr4:100,557,688-100,571,614 Size: 13,927 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr4:100,570,424-100,571,056 Size: 633 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:100,557,688-100,571,614)mRNA (may differ from genome)Protein (210 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaEnsembl
ExonPrimerGeneCardsH-INVMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.21 RPKM in Muscle - Skeletal
Total median expression: 9.26 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -212.80558-0.381 Picture PostScript Text
3' UTR -1200.694702-0.255 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AL833279 - Homo sapiens mRNA; cDNA DKFZp451H138 (from clone DKFZp451H138).
AL832378 - Homo sapiens mRNA; cDNA DKFZp451K177 (from clone DKFZp451K177).
JD306121 - Sequence 287145 from Patent EP1572962.
JD489735 - Sequence 470759 from Patent EP1572962.
JD243821 - Sequence 224845 from Patent EP1572962.
JD503828 - Sequence 484852 from Patent EP1572962.
JD110096 - Sequence 91120 from Patent EP1572962.
JD043454 - Sequence 24478 from Patent EP1572962.
JD136960 - Sequence 117984 from Patent EP1572962.
JD301180 - Sequence 282204 from Patent EP1572962.
JD474067 - Sequence 455091 from Patent EP1572962.
JD349843 - Sequence 330867 from Patent EP1572962.
JD291546 - Sequence 272570 from Patent EP1572962.
JD237505 - Sequence 218529 from Patent EP1572962.
JD313581 - Sequence 294605 from Patent EP1572962.
JD233795 - Sequence 214819 from Patent EP1572962.
JD528572 - Sequence 509596 from Patent EP1572962.
JD515330 - Sequence 496354 from Patent EP1572962.
JD562502 - Sequence 543526 from Patent EP1572962.
JD041090 - Sequence 22114 from Patent EP1572962.
JD081009 - Sequence 62033 from Patent EP1572962.
JD358829 - Sequence 339853 from Patent EP1572962.
JD357500 - Sequence 338524 from Patent EP1572962.
JD490288 - Sequence 471312 from Patent EP1572962.
JD486686 - Sequence 467710 from Patent EP1572962.
JD181321 - Sequence 162345 from Patent EP1572962.
JD374748 - Sequence 355772 from Patent EP1572962.
JD040271 - Sequence 21295 from Patent EP1572962.
JD228722 - Sequence 209746 from Patent EP1572962.
JD232681 - Sequence 213705 from Patent EP1572962.
JD234842 - Sequence 215866 from Patent EP1572962.
JD114035 - Sequence 95059 from Patent EP1572962.
JD038232 - Sequence 19256 from Patent EP1572962.
JD455044 - Sequence 436068 from Patent EP1572962.
JD147749 - Sequence 128773 from Patent EP1572962.
JD383744 - Sequence 364768 from Patent EP1572962.
JD077519 - Sequence 58543 from Patent EP1572962.
JD444753 - Sequence 425777 from Patent EP1572962.
JD156404 - Sequence 137428 from Patent EP1572962.
JD041775 - Sequence 22799 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc003hvd.3
Representative RNA: AL832378

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AL832378.1
exon count: 2CDS single in 3' UTR: no RNA size: 5906
ORF size: 633CDS single in intron: no Alignment % ID: 99.88
txCdsPredict score: 1461.50frame shift in genome: no % Coverage: 99.70
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.