Human Gene ZNF799 (uc002mts.4) Description and Page Index
  Description: Homo sapiens zinc finger protein 799 (ZNF799), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr19:12,490,003-12,512,088 Size: 22,086 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr19:12,491,155-12,492,075 Size: 921 Coding Exon Count: 1 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr19:12,490,003-12,512,088)mRNA (may differ from genome)Protein (306 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
MGIPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C036990 2-amino-3,8-dimethylimidazo(4,5-f)quinoxaline
  • C568376 MT19c compound
  • D013749 Tetrachlorodibenzodioxin

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.14 RPKM in Testis
Total median expression: 22.81 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -180.76520-0.348 Picture PostScript Text
3' UTR -320.361152-0.278 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  BC057831 - Homo sapiens cDNA clone IMAGE:30340957, **** WARNING: chimeric clone ****.
JD532687 - Sequence 513711 from Patent EP1572962.
JD431527 - Sequence 412551 from Patent EP1572962.
JD129612 - Sequence 110636 from Patent EP1572962.
JD302222 - Sequence 283246 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC057831
UCSC ID: uc002mts.4
RefSeq Accession: NM_001080821

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: BC057831.1
exon count: 4CDS single in 3' UTR: no RNA size: 2554
ORF size: 921CDS single in intron: no Alignment % ID: 99.96
txCdsPredict score: 1722.00frame shift in genome: no % Coverage: 99.41
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.