Human Gene SUMO1P3 (uc001fvw.3) Description and Page Index
  Description: Homo sapiens SUMO1 pseudogene 3 (SUMO1P3), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:160,287,055-160,288,260 Size: 1,206 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:160,287,055-160,288,260)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneNetworkHGNC
LynxPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.01 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 165.14 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  JD561554 - Sequence 542578 from Patent EP1572962.
JD250584 - Sequence 231608 from Patent EP1572962.
JD147811 - Sequence 128835 from Patent EP1572962.
JD404232 - Sequence 385256 from Patent EP1572962.
JD333954 - Sequence 314978 from Patent EP1572962.
JD501686 - Sequence 482710 from Patent EP1572962.
JD328134 - Sequence 309158 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_002190
UCSC ID: uc001fvw.3
RefSeq Accession: NR_002190

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_002190.1
exon count: 1CDS single in 3' UTR: no RNA size: 1210
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 501.50frame shift in genome: no % Coverage: 99.67
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.