Human Gene LOC202781 (uc010lqi.4) Description and Page Index
  Description: Homo sapiens uncharacterized LOC202781 (LOC202781), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr7:154,795,143-154,797,413 Size: 2,271 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr7:154,795,650-154,795,940 Size: 291 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:154,795,143-154,797,413)mRNA (may differ from genome)Protein (96 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.25 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 289.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -274.30507-0.541 Picture PostScript Text
3' UTR -423.791473-0.288 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC035068 - Homo sapiens hypothetical protein LOC202781, mRNA (cDNA clone IMAGE:5259707).
BC048116 - Homo sapiens hypothetical protein LOC202781, mRNA (cDNA clone IMAGE:5259512).
AL713756 - Homo sapiens mRNA; cDNA DKFZp667H1212 (from clone DKFZp667H1212).
AK098428 - Homo sapiens cDNA FLJ25562 fis, clone JTH02977.
JD413450 - Sequence 394474 from Patent EP1572962.
JD067306 - Sequence 48330 from Patent EP1572962.
JD461890 - Sequence 442914 from Patent EP1572962.
JD406906 - Sequence 387930 from Patent EP1572962.
JD180661 - Sequence 161685 from Patent EP1572962.
JD466606 - Sequence 447630 from Patent EP1572962.
JD210639 - Sequence 191663 from Patent EP1572962.
JD317266 - Sequence 298290 from Patent EP1572962.
JD191930 - Sequence 172954 from Patent EP1572962.
JD125002 - Sequence 106026 from Patent EP1572962.
JD498540 - Sequence 479564 from Patent EP1572962.
JD536981 - Sequence 518005 from Patent EP1572962.
JD425742 - Sequence 406766 from Patent EP1572962.
JD217313 - Sequence 198337 from Patent EP1572962.
JD430580 - Sequence 411604 from Patent EP1572962.
JD529940 - Sequence 510964 from Patent EP1572962.
JD435558 - Sequence 416582 from Patent EP1572962.
JD435559 - Sequence 416583 from Patent EP1572962.
JD308365 - Sequence 289389 from Patent EP1572962.
JD325480 - Sequence 306504 from Patent EP1572962.
JD152526 - Sequence 133550 from Patent EP1572962.
JD409229 - Sequence 390253 from Patent EP1572962.
JD138307 - Sequence 119331 from Patent EP1572962.
JD138308 - Sequence 119332 from Patent EP1572962.
JD175921 - Sequence 156945 from Patent EP1572962.
JD531544 - Sequence 512568 from Patent EP1572962.
JD175919 - Sequence 156943 from Patent EP1572962.
JD175920 - Sequence 156944 from Patent EP1572962.
JD332361 - Sequence 313385 from Patent EP1572962.
JD332363 - Sequence 313387 from Patent EP1572962.
JD369406 - Sequence 350430 from Patent EP1572962.
JD382769 - Sequence 363793 from Patent EP1572962.
JD332362 - Sequence 313386 from Patent EP1572962.
JD448350 - Sequence 429374 from Patent EP1572962.
JD448349 - Sequence 429373 from Patent EP1572962.
JD080617 - Sequence 61641 from Patent EP1572962.
JD528935 - Sequence 509959 from Patent EP1572962.
JD130175 - Sequence 111199 from Patent EP1572962.
JD316409 - Sequence 297433 from Patent EP1572962.
JD101587 - Sequence 82611 from Patent EP1572962.
JD220059 - Sequence 201083 from Patent EP1572962.
JD279392 - Sequence 260416 from Patent EP1572962.
JD483019 - Sequence 464043 from Patent EP1572962.
JD136324 - Sequence 117348 from Patent EP1572962.
JD081253 - Sequence 62277 from Patent EP1572962.
JD145169 - Sequence 126193 from Patent EP1572962.
JD152452 - Sequence 133476 from Patent EP1572962.
JD481911 - Sequence 462935 from Patent EP1572962.
JD205967 - Sequence 186991 from Patent EP1572962.
JD559710 - Sequence 540734 from Patent EP1572962.
JD431056 - Sequence 412080 from Patent EP1572962.
JD443045 - Sequence 424069 from Patent EP1572962.
JD457232 - Sequence 438256 from Patent EP1572962.
JD180544 - Sequence 161568 from Patent EP1572962.
JD517341 - Sequence 498365 from Patent EP1572962.
JD400459 - Sequence 381483 from Patent EP1572962.
JD283129 - Sequence 264153 from Patent EP1572962.
JD122537 - Sequence 103561 from Patent EP1572962.
JD351312 - Sequence 332336 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_028090, uc010lqi.3
UCSC ID: uc010lqi.4
RefSeq Accession: NR_028090

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_028090.1
exon count: 1CDS single in 3' UTR: no RNA size: 2275
ORF size: 291CDS single in intron: no Alignment % ID: 99.96
txCdsPredict score: 772.00frame shift in genome: no % Coverage: 99.82
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.