Human Gene BAHCC1 (uc002kaf.2) Description and Page Index
  Description: Homo sapiens BAH domain and coiled-coil containing 1 (BAHCC1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr17:79,373,540-79,433,358 Size: 59,819 Total Exon Count: 27 Strand: +
Coding Region
   Position: hg19 chr17:79,373,540-79,430,843 Size: 57,304 Coding Exon Count: 27 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:79,373,540-79,433,358)mRNA (may differ from genome)Protein (2608 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblExonPrimerGeneCardsGeneNetwork
H-INVHGNCHPRDLynxMGIneXtProt
PubMedStanford SOURCETreefamUniProtKB

-  Comments and Description Text from UniProtKB
  ID: BAHC1_HUMAN
DESCRIPTION: RecName: Full=BAH and coiled-coil domain-containing protein 1; AltName: Full=Bromo adjacent homology domain-containing protein 2; Short=BAH domain-containing protein 2;
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Contains 1 BAH domain.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -1033.292515-0.411 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001025 - BAH_dom

Pfam Domains:
PF01426 - BAH domain

ModBase Predicted Comparative 3D Structure on Q9P281
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details  Gene Details  
Gene Sorter  Gene Sorter  
  EnsemblFlyBase  
  Protein SequenceProtein Sequence  
  AlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000976 transcription regulatory region sequence-specific DNA binding
GO:0003682 chromatin binding

Biological Process:
GO:0006342 chromatin silencing
GO:0031507 heterochromatin assembly

Cellular Component:
GO:0000785 chromatin
GO:0005677 chromatin silencing complex


-  Descriptions from all associated GenBank mRNAs
  BC033222 - Homo sapiens BAH domain and coiled-coil containing 1, mRNA (cDNA clone IMAGE:5019335), partial cds.
AL713748 - Homo sapiens mRNA; cDNA DKFZp547L0213 (from clone DKFZp547L0213).
AB040880 - Homo sapiens mRNA for KIAA1447 protein, partial cds.
JD097746 - Sequence 78770 from Patent EP1572962.
JD173094 - Sequence 154118 from Patent EP1572962.
JD158158 - Sequence 139182 from Patent EP1572962.
JD460347 - Sequence 441371 from Patent EP1572962.
JD253318 - Sequence 234342 from Patent EP1572962.
JD121270 - Sequence 102294 from Patent EP1572962.
JD114704 - Sequence 95728 from Patent EP1572962.
JD132548 - Sequence 113572 from Patent EP1572962.
JD391528 - Sequence 372552 from Patent EP1572962.
JD370041 - Sequence 351065 from Patent EP1572962.
JD526596 - Sequence 507620 from Patent EP1572962.
JD338713 - Sequence 319737 from Patent EP1572962.
JD253225 - Sequence 234249 from Patent EP1572962.
JD327424 - Sequence 308448 from Patent EP1572962.
JD222207 - Sequence 203231 from Patent EP1572962.
JD461586 - Sequence 442610 from Patent EP1572962.
JD399731 - Sequence 380755 from Patent EP1572962.
JD124217 - Sequence 105241 from Patent EP1572962.
JD134112 - Sequence 115136 from Patent EP1572962.
JD532195 - Sequence 513219 from Patent EP1572962.
JD418239 - Sequence 399263 from Patent EP1572962.
JD323580 - Sequence 304604 from Patent EP1572962.
JD170317 - Sequence 151341 from Patent EP1572962.
JD062030 - Sequence 43054 from Patent EP1572962.
JD314353 - Sequence 295377 from Patent EP1572962.
JD481751 - Sequence 462775 from Patent EP1572962.
JD472969 - Sequence 453993 from Patent EP1572962.
JD445893 - Sequence 426917 from Patent EP1572962.
JD077219 - Sequence 58243 from Patent EP1572962.
JD056707 - Sequence 37731 from Patent EP1572962.
JD339748 - Sequence 320772 from Patent EP1572962.
JD121124 - Sequence 102148 from Patent EP1572962.
JD230492 - Sequence 211516 from Patent EP1572962.
JD444607 - Sequence 425631 from Patent EP1572962.
JD363124 - Sequence 344148 from Patent EP1572962.
JD047405 - Sequence 28429 from Patent EP1572962.
JD137440 - Sequence 118464 from Patent EP1572962.
JD286505 - Sequence 267529 from Patent EP1572962.
JD134697 - Sequence 115721 from Patent EP1572962.
JD437816 - Sequence 418840 from Patent EP1572962.
JD051308 - Sequence 32332 from Patent EP1572962.
JD196348 - Sequence 177372 from Patent EP1572962.
JD076924 - Sequence 57948 from Patent EP1572962.
JD069365 - Sequence 50389 from Patent EP1572962.
JD150059 - Sequence 131083 from Patent EP1572962.
JD196292 - Sequence 177316 from Patent EP1572962.
JD143171 - Sequence 124195 from Patent EP1572962.
JD375637 - Sequence 356661 from Patent EP1572962.
JD426215 - Sequence 407239 from Patent EP1572962.
JD210767 - Sequence 191791 from Patent EP1572962.
JD095024 - Sequence 76048 from Patent EP1572962.
JD192579 - Sequence 173603 from Patent EP1572962.
JD170348 - Sequence 151372 from Patent EP1572962.
JD466389 - Sequence 447413 from Patent EP1572962.
JD095911 - Sequence 76935 from Patent EP1572962.
JD061927 - Sequence 42951 from Patent EP1572962.
JD361967 - Sequence 342991 from Patent EP1572962.
JD067326 - Sequence 48350 from Patent EP1572962.
JD370589 - Sequence 351613 from Patent EP1572962.
JD526186 - Sequence 507210 from Patent EP1572962.
JD141277 - Sequence 122301 from Patent EP1572962.
JD340034 - Sequence 321058 from Patent EP1572962.
JD138741 - Sequence 119765 from Patent EP1572962.
JD340001 - Sequence 321025 from Patent EP1572962.
JD073735 - Sequence 54759 from Patent EP1572962.
JD372725 - Sequence 353749 from Patent EP1572962.
JD095206 - Sequence 76230 from Patent EP1572962.
JD306639 - Sequence 287663 from Patent EP1572962.
JD203426 - Sequence 184450 from Patent EP1572962.
JD426844 - Sequence 407868 from Patent EP1572962.
JD410615 - Sequence 391639 from Patent EP1572962.
JD138117 - Sequence 119141 from Patent EP1572962.
JD211199 - Sequence 192223 from Patent EP1572962.
JD213745 - Sequence 194769 from Patent EP1572962.
AK056636 - Homo sapiens cDNA FLJ32074 fis, clone OCBBF1000145.
JD279782 - Sequence 260806 from Patent EP1572962.
AK026711 - Homo sapiens cDNA: FLJ23058 fis, clone LNG03818.
JD305277 - Sequence 286301 from Patent EP1572962.
JD288196 - Sequence 269220 from Patent EP1572962.
BC050673 - Homo sapiens cDNA clone IMAGE:6150505.
JD223406 - Sequence 204430 from Patent EP1572962.
JD379871 - Sequence 360895 from Patent EP1572962.
JD261067 - Sequence 242091 from Patent EP1572962.
JD210872 - Sequence 191896 from Patent EP1572962.
JD470544 - Sequence 451568 from Patent EP1572962.
JD439677 - Sequence 420701 from Patent EP1572962.
JD560267 - Sequence 541291 from Patent EP1572962.
JD369552 - Sequence 350576 from Patent EP1572962.
JD123993 - Sequence 105017 from Patent EP1572962.
JD465440 - Sequence 446464 from Patent EP1572962.
JD469647 - Sequence 450671 from Patent EP1572962.
JD097568 - Sequence 78592 from Patent EP1572962.
JD054851 - Sequence 35875 from Patent EP1572962.
JD390549 - Sequence 371573 from Patent EP1572962.
JD380032 - Sequence 361056 from Patent EP1572962.
JD137387 - Sequence 118411 from Patent EP1572962.
JD349955 - Sequence 330979 from Patent EP1572962.
JD523901 - Sequence 504925 from Patent EP1572962.
JD153508 - Sequence 134532 from Patent EP1572962.
JD258899 - Sequence 239923 from Patent EP1572962.
JD341626 - Sequence 322650 from Patent EP1572962.
JD239913 - Sequence 220937 from Patent EP1572962.
JD377594 - Sequence 358618 from Patent EP1572962.
AF086116 - Homo sapiens full length insert cDNA clone ZA70C11.
JD227225 - Sequence 208249 from Patent EP1572962.
JD061911 - Sequence 42935 from Patent EP1572962.
JD139494 - Sequence 120518 from Patent EP1572962.
JD100827 - Sequence 81851 from Patent EP1572962.
JD279922 - Sequence 260946 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BAHC1_HUMAN, BAHD2, KIAA1447, NM_001080519, NP_001073988, Q5U629, Q9P281
UCSC ID: uc002kaf.2
RefSeq Accession: NM_001080519
Protein: Q9P281 (aka BAHC1_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001080519.2
exon count: 27CDS single in 3' UTR: no RNA size: 10342
ORF size: 7649CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 11414.00frame shift in genome: no % Coverage: 98.20
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 1
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
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