Human Gene LOC440311 (uc031quc.1) Description and Page Index
  Description: Homo sapiens glioma tumor suppressor candidate region gene 2 pseudogene (LOC440311), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr15:95,398,592-95,400,293 Size: 1,702 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr15:95,398,703-95,399,332 Size: 630 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:95,398,592-95,400,293)mRNA (may differ from genome)Protein (209 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGeneCardsLynxMGIPubMed
Stanford SOURCE

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.46 RPKM in Testis
Total median expression: 8.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.50111-0.122 Picture PostScript Text
3' UTR -430.31961-0.448 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
 Gene Details    
 Gene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  LF366832 - JP 2014500723-A/174335: Polycomb-Associated Non-Coding RNAs.
DQ576449 - Homo sapiens piRNA piR-44561, complete sequence.
LF366829 - JP 2014500723-A/174332: Polycomb-Associated Non-Coding RNAs.
JD031177 - Sequence 12201 from Patent EP1572962.
MA602409 - JP 2018138019-A/174335: Polycomb-Associated Non-Coding RNAs.
MA602406 - JP 2018138019-A/174332: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_077061
UCSC ID: uc031quc.1
RefSeq Accession: NR_077061

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_077061.1
exon count: 1CDS single in 3' UTR: no RNA size: 1704
ORF size: 630CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 774.50frame shift in genome: no % Coverage: 99.88
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.