Human Gene BCRP2 (uc011aia.3) Description and Page Index
  Description: Homo sapiens breakpoint cluster region pseudogene 2 (BCRP2), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr22:21,457,305-21,476,575 Size: 19,271 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr22:21,472,378-21,475,254 Size: 2,877 Coding Exon Count: 3 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:21,457,305-21,476,575)mRNA (may differ from genome)Protein (181 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsH-INV
HGNCLynxMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.93 RPKM in Testis
Total median expression: 12.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -200.92467-0.430 Picture PostScript Text
3' UTR -519.921321-0.394 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK124943 - Homo sapiens cDNA FLJ42953 fis, clone BRSTN2008418, moderately similar to Breakpoint cluster region protein (EC 2.7.1.-).
BC063619 - Homo sapiens breakpoint cluster region, mRNA (cDNA clone IMAGE:4181461).
JD294739 - Sequence 275763 from Patent EP1572962.
JD197049 - Sequence 178073 from Patent EP1572962.
JD124871 - Sequence 105895 from Patent EP1572962.
JD195155 - Sequence 176179 from Patent EP1572962.
JD498487 - Sequence 479511 from Patent EP1572962.
JD462977 - Sequence 444001 from Patent EP1572962.
JD199865 - Sequence 180889 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_037566, uc011aia.2
UCSC ID: uc011aia.3
RefSeq Accession: NR_037566

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_037566.1
exon count: 6CDS single in 3' UTR: no RNA size: 2334
ORF size: 546CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 803.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.