Human Gene NPIPL1 (uc010vct.2) Description and Page Index
  Description: SubName: Full=Nuclear pore complex-interacting protein-like 1;
Transcript (Including UTRs)
   Position: hg19 chr16:28,467,696-29,415,809 Size: 948,114 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr16:28,467,745-29,415,028 Size: 947,284 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:28,467,696-29,415,809)mRNA (may differ from genome)Protein (429 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
GeneCardsH-INVHGNCLynxMGIPubMed
Stanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: E7ERT9_HUMAN
DESCRIPTION: SubName: Full=Nuclear pore complex-interacting protein-like 1;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.19 RPKM in Testis
Total median expression: 13.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -191.32781-0.245 Picture PostScript Text
3' UTR 0.00490.000 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009443 - NPIP

Pfam Domains:
PF06409 - Nuclear pore complex interacting protein (NPIP)

ModBase Predicted Comparative 3D Structure on E7ERT9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  JD405478 - Sequence 386502 from Patent EP1572962.
JD452519 - Sequence 433543 from Patent EP1572962.
JD487334 - Sequence 468358 from Patent EP1572962.
JD100455 - Sequence 81479 from Patent EP1572962.
JD051318 - Sequence 32342 from Patent EP1572962.
JD168691 - Sequence 149715 from Patent EP1572962.
JD265689 - Sequence 246713 from Patent EP1572962.
JD120874 - Sequence 101898 from Patent EP1572962.
JD320594 - Sequence 301618 from Patent EP1572962.
JD041123 - Sequence 22147 from Patent EP1572962.
JD360504 - Sequence 341528 from Patent EP1572962.
JD120385 - Sequence 101409 from Patent EP1572962.
JD096807 - Sequence 77831 from Patent EP1572962.
JD352353 - Sequence 333377 from Patent EP1572962.
JD449214 - Sequence 430238 from Patent EP1572962.
JD148745 - Sequence 129769 from Patent EP1572962.
BC156858 - Synthetic construct Homo sapiens clone IMAGE:100062507, MGC:190534 nuclear pore complex interacting protein-like 1 (NPIPL1) mRNA, encodes complete protein.
AB527617 - Synthetic construct DNA, clone: pF1KE0285, Homo sapiens NPIPL1 gene for nuclear pore complex interacting protein-like 1, without stop codon, in Flexi system.
DQ597666 - Homo sapiens piRNA piR-35732, complete sequence.
BC111068 - Homo sapiens ceroid-lipofuscinosis, neuronal 3, mRNA (cDNA clone MGC:102840 IMAGE:5764535), complete cds.
JD556281 - Sequence 537305 from Patent EP1572962.
KF175217 - Homo sapiens clone p_10 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.
JD438283 - Sequence 419307 from Patent EP1572962.
JD444457 - Sequence 425481 from Patent EP1572962.
JD374720 - Sequence 355744 from Patent EP1572962.
JD488661 - Sequence 469685 from Patent EP1572962.
JD296820 - Sequence 277844 from Patent EP1572962.
JD193087 - Sequence 174111 from Patent EP1572962.
JD046697 - Sequence 27721 from Patent EP1572962.
JD501917 - Sequence 482941 from Patent EP1572962.
JD175249 - Sequence 156273 from Patent EP1572962.
DQ573051 - Homo sapiens piRNA piR-41163, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: BC171825, E7ERT9, E7ERT9_HUMAN
UCSC ID: uc010vct.2
Representative RNA: BC171825
Protein: E7ERT9

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC171825.1
exon count: 8CDS single in 3' UTR: no RNA size: 2125
ORF size: 1290CDS single in intron: no Alignment % ID: 99.39
txCdsPredict score: 1161.50frame shift in genome: no % Coverage: 99.76
has start codon: yes stop codon in genome: no # of Alignments: 2
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.