Human Gene SLC13A4 (uc003vta.3) Description and Page Index
  Description: Homo sapiens solute carrier family 13 (sodium/sulfate symporters), member 4 (SLC13A4), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr7:135,365,987-135,412,933 Size: 46,947 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr7:135,366,311-135,412,244 Size: 45,934 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsGenetic AssociationsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:135,365,987-135,412,933)mRNA (may differ from genome)Protein (626 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKB

-  Comments and Description Text from UniProtKB
  ID: S13A4_HUMAN
DESCRIPTION: RecName: Full=Solute carrier family 13 member 4; AltName: Full=Na(+)/sulfate cotransporter SUT-1; AltName: Full=NaS2;
FUNCTION: Sodium/sulfate cotransporter that mediates sulfate reabsorption in the high endothelial venules (HEV).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Highly expressed in placenta and testis with intermediate levels in brain and lower levels in heart, thymus and liver.
MISCELLANEOUS: Transport is inhibited by thiosulfate, phosphate, molybdate, selenate and tungstate. Not inhibited by oxalate, citrate, succinate, phenol red or 4,4'-diisothiocyanostilbene- 2,2'-disulfonic acid (DIDS).
SIMILARITY: Belongs to the SLC13A/DASS transporter (TC 2.A.47) family. NADC subfamily.

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): SLC13A4
CDC HuGE Published Literature: SLC13A4

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.22 RPKM in Testis
Total median expression: 19.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -232.90689-0.338 Picture PostScript Text
3' UTR -68.30324-0.211 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001898 - Na/sul_symport

Pfam Domains:
PF00939 - Sodium:sulfate symporter transmembrane region
PF03600 - Citrate transporter
PF06808 - Tripartite ATP-independent periplasmic transporter, DctM component

ModBase Predicted Comparative 3D Structure on Q9UKG4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005215 transporter activity
GO:0015293 symporter activity
GO:0015382 sodium:sulfate symporter activity

Biological Process:
GO:0006811 ion transport
GO:0006814 sodium ion transport
GO:0008272 sulfate transport
GO:0055085 transmembrane transport
GO:0098656 anion transmembrane transport
GO:1902358 sulfate transmembrane transport

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AF169301 - Homo sapiens Na+/sulfate cotransporter SUT-1 (SUT-1) mRNA, complete cds.
BC030689 - Homo sapiens solute carrier family 13 (sodium/sulfate symporters), member 4, mRNA (cDNA clone MGC:26200 IMAGE:4821193), complete cds.
AB208809 - Homo sapiens mRNA for solute carrier family 13 (sodium/sulfate symporters), member 4 variant protein.
AK313072 - Homo sapiens cDNA, FLJ93553.
DQ893558 - Synthetic construct clone IMAGE:100006188; FLH166796.01X; RZPDo839D0588D solute carrier family 13 (sodium/sulfate symporters), member 4 (SLC13A4) gene, encodes complete protein.
KJ904714 - Synthetic construct Homo sapiens clone ccsbBroadEn_14108 SLC13A4-like gene, encodes complete protein.
DQ894040 - Synthetic construct Homo sapiens clone IMAGE:100008500; FLH166792.01L; RZPDo839D0587D solute carrier family 13 (sodium/sulfate symporters), member 4 (SLC13A4) gene, encodes complete protein.
JD110487 - Sequence 91511 from Patent EP1572962.
JD504329 - Sequence 485353 from Patent EP1572962.
JD467518 - Sequence 448542 from Patent EP1572962.
JD187840 - Sequence 168864 from Patent EP1572962.
JD412501 - Sequence 393525 from Patent EP1572962.
JD269978 - Sequence 251002 from Patent EP1572962.
JD094997 - Sequence 76021 from Patent EP1572962.
JD060516 - Sequence 41540 from Patent EP1572962.
JD444534 - Sequence 425558 from Patent EP1572962.
JD056517 - Sequence 37541 from Patent EP1572962.
JD047092 - Sequence 28116 from Patent EP1572962.
JD524218 - Sequence 505242 from Patent EP1572962.
JD425010 - Sequence 406034 from Patent EP1572962.
JD277197 - Sequence 258221 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UKG4 (Reactome details) participates in the following event(s):

R-HSA-433099 NaS2 co-transports sulphate and two sodium ions
R-HSA-433137 Sodium-coupled sulphate, di- and tri-carboxylate transporters
R-HSA-425366 Transport of bile salts and organic acids, metal ions and amine compounds
R-HSA-425471 Bile salt and organic anion SLC transporters
R-HSA-425407 SLC-mediated transmembrane transport
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: A4D1Q4, NM_012450, NP_036582, Q8N631, Q9UKG4, S13A4_HUMAN, SUT1
UCSC ID: uc003vta.3
RefSeq Accession: NM_012450
Protein: Q9UKG4 (aka S13A4_HUMAN or S134_HUMAN)
CCDS: CCDS5840.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_012450.2
exon count: 16CDS single in 3' UTR: no RNA size: 2908
ORF size: 1881CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3746.00frame shift in genome: no % Coverage: 99.52
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.