Human Gene CTB-33O18.3 (uc003mcp.4)
  Description: Homo sapiens uncharacterized CTB-33O18.3 (CTB-33O18.3), transcript variant 1, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr5:173,006,646-173,012,075 Size: 5,430 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:173,006,646-173,012,075)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.66 RPKM in Testis
Total median expression: 10.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC033564 - Homo sapiens hypothetical protein LOC285593, mRNA (cDNA clone IMAGE:4826647).
BC037875 - Homo sapiens hypothetical protein LOC285593, mRNA (cDNA clone IMAGE:5273432).
JD053356 - Sequence 34380 from Patent EP1572962.
JD486724 - Sequence 467748 from Patent EP1572962.
JD417350 - Sequence 398374 from Patent EP1572962.
JD260661 - Sequence 241685 from Patent EP1572962.
JD350412 - Sequence 331436 from Patent EP1572962.
JD373125 - Sequence 354149 from Patent EP1572962.
JD049687 - Sequence 30711 from Patent EP1572962.
JD361771 - Sequence 342795 from Patent EP1572962.
JD440440 - Sequence 421464 from Patent EP1572962.
JD436363 - Sequence 417387 from Patent EP1572962.
JD506173 - Sequence 487197 from Patent EP1572962.
JD236693 - Sequence 217717 from Patent EP1572962.
JD042543 - Sequence 23567 from Patent EP1572962.
JD540917 - Sequence 521941 from Patent EP1572962.
JD131788 - Sequence 112812 from Patent EP1572962.
JD339138 - Sequence 320162 from Patent EP1572962.
JD269897 - Sequence 250921 from Patent EP1572962.
JD483640 - Sequence 464664 from Patent EP1572962.
JD484292 - Sequence 465316 from Patent EP1572962.
JD256337 - Sequence 237361 from Patent EP1572962.
JD436574 - Sequence 417598 from Patent EP1572962.
JD495555 - Sequence 476579 from Patent EP1572962.
JD563412 - Sequence 544436 from Patent EP1572962.
JD367109 - Sequence 348133 from Patent EP1572962.
JD434382 - Sequence 415406 from Patent EP1572962.
JD528255 - Sequence 509279 from Patent EP1572962.
JD043474 - Sequence 24498 from Patent EP1572962.
JD079879 - Sequence 60903 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: LOC285593, NR_027108
UCSC ID: uc003mcp.4
RefSeq Accession: NR_027108

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_027108.1
exon count: 4CDS single in 3' UTR: no RNA size: 1781
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 282.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.