Human Gene ZNF728 (uc002nqz.2) Description and Page Index
  Description: Homo sapiens zinc finger protein 728 (ZNF728), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr19:23,157,685-23,186,010 Size: 28,326 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr19:23,158,270-23,185,832 Size: 27,563 Coding Exon Count: 4 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:23,157,685-23,186,010)mRNA (may differ from genome)Protein (622 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsHGNC
LynxMGIPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.24 RPKM in Testis
Total median expression: 11.47 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -68.30178-0.384 Picture PostScript Text
3' UTR -135.30585-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
 Gene Details    
 Gene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK097798 - Homo sapiens cDNA FLJ40479 fis, clone TESTI2043282, moderately similar to ZINC FINGER PROTEIN 43.
JD498089 - Sequence 479113 from Patent EP1572962.
LF340533 - JP 2014500723-A/148036: Polycomb-Associated Non-Coding RNAs.
JD314899 - Sequence 295923 from Patent EP1572962.
JD314900 - Sequence 295924 from Patent EP1572962.
JD314898 - Sequence 295922 from Patent EP1572962.
JD066994 - Sequence 48018 from Patent EP1572962.
JD051988 - Sequence 33012 from Patent EP1572962.
BC128131 - Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112376).
JD314882 - Sequence 295906 from Patent EP1572962.
LF340533 - JP 2014500723-A/148036: Polycomb-Associated Non-Coding RNAs.
JD314898 - Sequence 295922 from Patent EP1572962.
JD314899 - Sequence 295923 from Patent EP1572962.
JD314900 - Sequence 295924 from Patent EP1572962.
BC128130 - Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).
JD103006 - Sequence 84030 from Patent EP1572962.
JD098181 - Sequence 79205 from Patent EP1572962.
JD098182 - Sequence 79206 from Patent EP1572962.
JD259381 - Sequence 240405 from Patent EP1572962.
JD259380 - Sequence 240404 from Patent EP1572962.
MA576110 - JP 2018138019-A/148036: Polycomb-Associated Non-Coding RNAs.
MA576110 - JP 2018138019-A/148036: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001267716, NP_001254645, uc002nqz.1
UCSC ID: uc002nqz.2
RefSeq Accession: NM_001267716
CCDS: CCDS59370.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001267716.1
exon count: 4CDS single in 3' UTR: no RNA size: 2632
ORF size: 1869CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2051.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.