Human Gene C12orf71 (uc001rhq.3) Description and Page Index
  Description: Homo sapiens chromosome 12 open reading frame 71 (C12orf71), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr12:27,233,990-27,235,455 Size: 1,466 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr12:27,234,107-27,235,416 Size: 1,310 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:27,233,990-27,235,455)mRNA (may differ from genome)Protein (269 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsGeneNetworkHGNC
HPRDLynxMGIneXtProtPubMedStanford SOURCE
UniProtKB

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.35 RPKM in Testis
Total median expression: 9.85 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.5039-0.115 Picture PostScript Text
3' UTR -14.90117-0.127 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15480 - Domain of unknown function (DUF4640)

ModBase Predicted Comparative 3D Structure on A8MTZ7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Other Names for This Gene
  Alternate Gene Symbols: A8MTZ7, CL071_HUMAN, NM_001080406, NP_001073875
UCSC ID: uc001rhq.3
RefSeq Accession: NM_001080406
Protein: A8MTZ7 (aka CL071_HUMAN)
CCDS: CCDS44851.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001080406.1
exon count: 2CDS single in 3' UTR: no RNA size: 966
ORF size: 810CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1820.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.