Human Gene LINC00163 (uc021wjz.1) Description and Page Index
  Description: Homo sapiens long intergenic non-protein coding RNA 163 (LINC00163), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr21:46,409,779-46,414,001 Size: 4,223 Total Exon Count: 2 Strand: -


Page IndexSequence and LinksMalaCardsRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:46,409,779-46,414,001)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerHGNCLynx
OMIMPubMedStanford SOURCE

-  MalaCards Disease Associations
  MalaCards Gene Search: LINC00163
Diseases sorted by gene-association score: narcolepsy (5)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.16 RPKM in Esophagus - Muscularis
Total median expression: 7.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC036902 - Homo sapiens, clone IMAGE:4536929, mRNA.
BC046564 - Homo sapiens, clone IMAGE:4539545, mRNA.
JD495519 - Sequence 476543 from Patent EP1572962.
JD405315 - Sequence 386339 from Patent EP1572962.
JD386015 - Sequence 367039 from Patent EP1572962.
JD309538 - Sequence 290562 from Patent EP1572962.
JD529838 - Sequence 510862 from Patent EP1572962.
JD338687 - Sequence 319711 from Patent EP1572962.
JD138658 - Sequence 119682 from Patent EP1572962.
JD391677 - Sequence 372701 from Patent EP1572962.
JD124466 - Sequence 105490 from Patent EP1572962.
JD356147 - Sequence 337171 from Patent EP1572962.
JD221005 - Sequence 202029 from Patent EP1572962.
JD399346 - Sequence 380370 from Patent EP1572962.
JD329397 - Sequence 310421 from Patent EP1572962.
JD474653 - Sequence 455677 from Patent EP1572962.
JD329459 - Sequence 310483 from Patent EP1572962.
JD337804 - Sequence 318828 from Patent EP1572962.
JD432346 - Sequence 413370 from Patent EP1572962.
JD253021 - Sequence 234045 from Patent EP1572962.
JD470170 - Sequence 451194 from Patent EP1572962.
JD251233 - Sequence 232257 from Patent EP1572962.
JD106388 - Sequence 87412 from Patent EP1572962.
JD479885 - Sequence 460909 from Patent EP1572962.
JD445183 - Sequence 426207 from Patent EP1572962.
JD472667 - Sequence 453691 from Patent EP1572962.
JD365546 - Sequence 346570 from Patent EP1572962.
JD492110 - Sequence 473134 from Patent EP1572962.
JD137824 - Sequence 118848 from Patent EP1572962.
JD317423 - Sequence 298447 from Patent EP1572962.
JD204665 - Sequence 185689 from Patent EP1572962.
JD445807 - Sequence 426831 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_033840
UCSC ID: uc021wjz.1
RefSeq Accession: NR_033840

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_033840.1
exon count: 2CDS single in 3' UTR: no RNA size: 2155
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 542.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.