Human Gene LOC643387 (uc010znu.2)
Description: Homo sapiens TAR DNA binding protein pseudogene (LOC643387), non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr2:239,140,327-239,142,985 Size: 2,659 Total Exon Count: 1 Strand: +
Coding Region
Position: hg19 chr2:239,140,522-239,140,860 Size: 339 Coding Exon Count: 1
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Common Gene Haplotype Alleles
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Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
BC059397 - Homo sapiens cDNA clone IMAGE:5268977, **** WARNING: chimeric clone ****.JD200426 - Sequence 181450 from Patent EP1572962.DQ580109 - Homo sapiens piRNA piR-48221, complete sequence.JD215286 - Sequence 196310 from Patent EP1572962.JD499029 - Sequence 480053 from Patent EP1572962.JD213728 - Sequence 194752 from Patent EP1572962.JD089146 - Sequence 70170 from Patent EP1572962.JD093354 - Sequence 74378 from Patent EP1572962.JD225854 - Sequence 206878 from Patent EP1572962.LF348438 - JP 2014500723-A/155941: Polycomb-Associated Non-Coding RNAs.JD290976 - Sequence 272000 from Patent EP1572962.LF348439 - JP 2014500723-A/155942: Polycomb-Associated Non-Coding RNAs.LF348441 - JP 2014500723-A/155944: Polycomb-Associated Non-Coding RNAs.JD393059 - Sequence 374083 from Patent EP1572962.LF348442 - JP 2014500723-A/155945: Polycomb-Associated Non-Coding RNAs.JD151573 - Sequence 132597 from Patent EP1572962.JD250187 - Sequence 231211 from Patent EP1572962.JD436986 - Sequence 418010 from Patent EP1572962.JD252875 - Sequence 233899 from Patent EP1572962.JD558038 - Sequence 539062 from Patent EP1572962.JD255269 - Sequence 236293 from Patent EP1572962.JD399944 - Sequence 380968 from Patent EP1572962.JD339413 - Sequence 320437 from Patent EP1572962.JD080681 - Sequence 61705 from Patent EP1572962.JD279300 - Sequence 260324 from Patent EP1572962.JD547866 - Sequence 528890 from Patent EP1572962.JD272469 - Sequence 253493 from Patent EP1572962.MA584015 - JP 2018138019-A/155941: Polycomb-Associated Non-Coding RNAs.MA584016 - JP 2018138019-A/155942: Polycomb-Associated Non-Coding RNAs.MA584018 - JP 2018138019-A/155944: Polycomb-Associated Non-Coding RNAs.MA584019 - JP 2018138019-A/155945: Polycomb-Associated Non-Coding RNAs.MA823565 - WO 2019013141-A/3: Antisense oligonucleotide for regulating TDP-43 expression level and use thereof.MA823627 - WO 2019013141-A/65: Antisense oligonucleotide for regulating TDP-43 expression level and use thereof.MA823567 - WO 2019013141-A/5: Antisense oligonucleotide for regulating TDP-43 expression level and use thereof.
Other Names for This Gene
Alternate Gene Symbols: NR_026923UCSC ID: uc010znu.2RefSeq Accession: NR_026923
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NR_026923.1
exon count:
1 CDS single in 3' UTR:
no
RNA size:
2660
ORF size:
339 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
787.00 frame shift in genome:
no
% Coverage:
99.96
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.