Human Gene C10orf40 (uc021prf.1) Description and Page Index
  Description: Homo sapiens chromosome 10 open reading frame 40 (C10orf40), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr10:61,715,188-61,720,671 Size: 5,484 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:61,715,188-61,720,671)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneNetworkHGNCLynxPubMed
Stanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.37 RPKM in Testis
Total median expression: 3.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  KJ900941 - Synthetic construct Homo sapiens clone ccsbBroadEn_10335 C10orf40 gene, encodes complete protein.
CR933684 - Homo sapiens mRNA; cDNA DKFZp781D1522 (from clone DKFZp781D1522).
JD073050 - Sequence 54074 from Patent EP1572962.
BC119749 - Homo sapiens chromosome 10 open reading frame 40, mRNA (cDNA clone IMAGE:40119255).
BC119750 - Homo sapiens chromosome 10 open reading frame 40, mRNA (cDNA clone IMAGE:40119256).
BC038741 - Homo sapiens cDNA clone IMAGE:5268447.
BC126326 - Homo sapiens cDNA clone IMAGE:8992042.
BC130402 - Homo sapiens cDNA clone IMAGE:40146433.
BC048976 - Homo sapiens chromosome 10 open reading frame 40, mRNA (cDNA clone IMAGE:4829074).
JD101187 - Sequence 82211 from Patent EP1572962.
JD551082 - Sequence 532106 from Patent EP1572962.
JD042597 - Sequence 23621 from Patent EP1572962.
JD340554 - Sequence 321578 from Patent EP1572962.
JD411263 - Sequence 392287 from Patent EP1572962.
JD130263 - Sequence 111287 from Patent EP1572962.
JD464055 - Sequence 445079 from Patent EP1572962.
JD131897 - Sequence 112921 from Patent EP1572962.
JD146263 - Sequence 127287 from Patent EP1572962.
JD092402 - Sequence 73426 from Patent EP1572962.
JD311021 - Sequence 292045 from Patent EP1572962.
JD488547 - Sequence 469571 from Patent EP1572962.
JD037991 - Sequence 19015 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CR933684
UCSC ID: uc021prf.1
RefSeq Accession: NR_024340

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: CR933684.1
exon count: 3CDS single in 3' UTR: no RNA size: 4361
ORF size: 0CDS single in intron: no Alignment % ID: 99.84
txCdsPredict score: 233.00frame shift in genome: no % Coverage: 99.22
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.