Human Gene LOC400685 (uc002nwj.3) Description and Page Index
  Description: Homo sapiens uncharacterized LOC400685 (LOC400685), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr19:35,307,058-35,323,773 Size: 16,716 Total Exon Count: 6 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:35,307,058-35,323,773)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.62 RPKM in Testis
Total median expression: 7.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC045806 - Homo sapiens hypothetical gene supported by BC045806, mRNA (cDNA clone IMAGE:4821845).
DQ577992 - Homo sapiens piRNA piR-46104, complete sequence.
DQ586438 - Homo sapiens piRNA piR-53550, complete sequence.
DQ583184 - Homo sapiens piRNA piR-50296, complete sequence.
DQ593004 - Homo sapiens piRNA piR-33116, complete sequence.
DQ585672 - Homo sapiens piRNA piR-52784, complete sequence.
DQ569915 - Homo sapiens piRNA piR-30027, complete sequence.
DQ582582 - Homo sapiens piRNA piR-32694, complete sequence.
DQ574056 - Homo sapiens piRNA piR-42168, complete sequence.
DQ574057 - Homo sapiens piRNA piR-42169, complete sequence.
DQ574055 - Homo sapiens piRNA piR-42167, complete sequence.
DQ583513 - Homo sapiens piRNA piR-50625, complete sequence.
DQ588209 - Homo sapiens piRNA piR-55321, complete sequence.
DQ578046 - Homo sapiens piRNA piR-46158, complete sequence.
DQ573591 - Homo sapiens piRNA piR-41703, complete sequence.
DQ573590 - Homo sapiens piRNA piR-41702, complete sequence.
DQ579277 - Homo sapiens piRNA piR-47389, complete sequence.
DQ590725 - Homo sapiens piRNA piR-57837, complete sequence.
DQ595582 - Homo sapiens piRNA piR-61694, complete sequence.
DQ575333 - Homo sapiens piRNA piR-43445, complete sequence.
DQ570342 - Homo sapiens piRNA piR-30454, complete sequence.
DQ586810 - Homo sapiens piRNA piR-53922, complete sequence.
DQ586811 - Homo sapiens piRNA piR-53923, complete sequence.
DQ579906 - Homo sapiens piRNA piR-48018, complete sequence.
DQ577604 - Homo sapiens piRNA piR-45716, complete sequence.
DQ584581 - Homo sapiens piRNA piR-51693, complete sequence.
DQ584580 - Homo sapiens piRNA piR-51692, complete sequence.
DQ576879 - Homo sapiens piRNA piR-44991, complete sequence.
DQ588196 - Homo sapiens piRNA piR-55308, complete sequence.
DQ598030 - Homo sapiens piRNA piR-36096, complete sequence.
DQ588195 - Homo sapiens piRNA piR-55307, complete sequence.
DQ600615 - Homo sapiens piRNA piR-38681, complete sequence.
DQ580174 - Homo sapiens piRNA piR-48286, complete sequence.
DQ580173 - Homo sapiens piRNA piR-48285, complete sequence.
DQ597538 - Homo sapiens piRNA piR-35604, complete sequence.
DQ585791 - Homo sapiens piRNA piR-52903, complete sequence.
DQ582887 - Homo sapiens piRNA piR-32999, complete sequence.
DQ575280 - Homo sapiens piRNA piR-43392, complete sequence.
DQ583171 - Homo sapiens piRNA piR-50283, complete sequence.
DQ593263 - Homo sapiens piRNA piR-33375, complete sequence.
DQ590494 - Homo sapiens piRNA piR-57606, complete sequence.
DQ590493 - Homo sapiens piRNA piR-57605, complete sequence.
DQ593013 - Homo sapiens piRNA piR-33125, complete sequence.
DQ601615 - Homo sapiens piRNA piR-39681, complete sequence.
DQ578587 - Homo sapiens piRNA piR-46699, complete sequence.
DQ573958 - Homo sapiens piRNA piR-42070, complete sequence.
DQ586362 - Homo sapiens piRNA piR-53474, complete sequence.
DQ586361 - Homo sapiens piRNA piR-53473, complete sequence.
DQ584685 - Homo sapiens piRNA piR-51797, complete sequence.
DQ598514 - Homo sapiens piRNA piR-36580, complete sequence.
DQ600697 - Homo sapiens piRNA piR-38763, complete sequence.
DQ589937 - Homo sapiens piRNA piR-57049, complete sequence.
DQ589938 - Homo sapiens piRNA piR-57050, complete sequence.
DQ589936 - Homo sapiens piRNA piR-57048, complete sequence.
DQ584591 - Homo sapiens piRNA piR-51703, complete sequence.
DQ596232 - Homo sapiens piRNA piR-34298, complete sequence.
DQ571949 - Homo sapiens piRNA piR-40061, complete sequence.
DQ601622 - Homo sapiens piRNA piR-39688, complete sequence.
DQ578771 - Homo sapiens piRNA piR-46883, complete sequence.
DQ577540 - Homo sapiens piRNA piR-45652, complete sequence.
DQ575218 - Homo sapiens piRNA piR-43330, complete sequence.
DQ591580 - Homo sapiens piRNA piR-58692, complete sequence.
DQ599051 - Homo sapiens piRNA piR-37117, complete sequence.
DQ578837 - Homo sapiens piRNA piR-46949, complete sequence.
DQ570907 - Homo sapiens piRNA piR-31019, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_033982
UCSC ID: uc002nwj.3
RefSeq Accession: NR_033982

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_033982.1
exon count: 6CDS single in 3' UTR: no RNA size: 2090
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 118.00frame shift in genome: no % Coverage: 99.52
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.