Human Gene LOC80154 (uc002bhh.5) Description and Page Index
  Description: Homo sapiens golgin A2 pseudogene (LOC80154), transcript variant 1, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr15:82,763,613-82,798,352 Size: 34,740 Total Exon Count: 6 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:82,763,613-82,798,352)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.16 RPKM in Minor Salivary Gland
Total median expression: 40.90 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AF316855 - Homo sapiens colon cancer-associated antigen AgSK1-2HT-ECS mRNA, complete cds.
JD198552 - Sequence 179576 from Patent EP1572962.
JD338377 - Sequence 319401 from Patent EP1572962.
JD537125 - Sequence 518149 from Patent EP1572962.
JD142455 - Sequence 123479 from Patent EP1572962.
JD399324 - Sequence 380348 from Patent EP1572962.
JD193182 - Sequence 174206 from Patent EP1572962.
JD063640 - Sequence 44664 from Patent EP1572962.
JD318036 - Sequence 299060 from Patent EP1572962.
JD132772 - Sequence 113796 from Patent EP1572962.
JD070725 - Sequence 51749 from Patent EP1572962.
JD094069 - Sequence 75093 from Patent EP1572962.
JD239042 - Sequence 220066 from Patent EP1572962.
JD221666 - Sequence 202690 from Patent EP1572962.
JD565876 - Sequence 546900 from Patent EP1572962.
BC065260 - Homo sapiens hypothetical LOC80154, mRNA (cDNA clone IMAGE:6144741).
BC007811 - Homo sapiens hypothetical LOC80154, mRNA (cDNA clone IMAGE:4298702).
AK026448 - Homo sapiens cDNA: FLJ22795 fis, clone KAIA2543.
BC072390 - Homo sapiens similar to cis-Golgi matrix protein GM130, mRNA (cDNA clone IMAGE:5727110).
JD413567 - Sequence 394591 from Patent EP1572962.
JD397524 - Sequence 378548 from Patent EP1572962.
JD060326 - Sequence 41350 from Patent EP1572962.
JD056300 - Sequence 37324 from Patent EP1572962.
DQ577319 - Homo sapiens piRNA piR-45431, complete sequence.
DQ572910 - Homo sapiens piRNA piR-41022, complete sequence.
DQ595302 - Homo sapiens piRNA piR-61414, complete sequence.
DQ588677 - Homo sapiens piRNA piR-55789, complete sequence.
DQ588676 - Homo sapiens piRNA piR-55788, complete sequence.
DQ595417 - Homo sapiens piRNA piR-61529, complete sequence.
DQ596877 - Homo sapiens piRNA piR-34943, complete sequence.
DQ575746 - Homo sapiens piRNA piR-43858, complete sequence.
DQ575747 - Homo sapiens piRNA piR-43859, complete sequence.
DQ593863 - Homo sapiens piRNA piR-33975, complete sequence.
JD258952 - Sequence 239976 from Patent EP1572962.
DQ597383 - Homo sapiens piRNA piR-35449, complete sequence.
DQ593031 - Homo sapiens piRNA piR-33143, complete sequence.
DQ573108 - Homo sapiens piRNA piR-41220, complete sequence.
DQ573109 - Homo sapiens piRNA piR-41221, complete sequence.
DQ573107 - Homo sapiens piRNA piR-41219, complete sequence.
DQ573106 - Homo sapiens piRNA piR-41218, complete sequence.
DQ596915 - Homo sapiens piRNA piR-34981, complete sequence.
DQ581896 - Homo sapiens piRNA piR-50008, complete sequence.
DQ598270 - Homo sapiens piRNA piR-36336, complete sequence.
DQ596274 - Homo sapiens piRNA piR-34340, complete sequence.
DQ585792 - Homo sapiens piRNA piR-52904, complete sequence.
JD545451 - Sequence 526475 from Patent EP1572962.
JD230155 - Sequence 211179 from Patent EP1572962.
JD230154 - Sequence 211178 from Patent EP1572962.
JD389346 - Sequence 370370 from Patent EP1572962.
JD106296 - Sequence 87320 from Patent EP1572962.
JD124524 - Sequence 105548 from Patent EP1572962.
JD124737 - Sequence 105761 from Patent EP1572962.
JD124736 - Sequence 105760 from Patent EP1572962.
JD178900 - Sequence 159924 from Patent EP1572962.
JD173105 - Sequence 154129 from Patent EP1572962.
JD443780 - Sequence 424804 from Patent EP1572962.
JD342934 - Sequence 323958 from Patent EP1572962.
JD471026 - Sequence 452050 from Patent EP1572962.
JD405597 - Sequence 386621 from Patent EP1572962.
JD383148 - Sequence 364172 from Patent EP1572962.
JD125256 - Sequence 106280 from Patent EP1572962.
JD182796 - Sequence 163820 from Patent EP1572962.
DQ582069 - Homo sapiens piRNA piR-32181, complete sequence.
AK309420 - Homo sapiens cDNA, FLJ99461.
AK311124 - Homo sapiens cDNA, FLJ18166.
JD521182 - Sequence 502206 from Patent EP1572962.
DQ586808 - Homo sapiens piRNA piR-53920, complete sequence.
DQ583283 - Homo sapiens piRNA piR-50395, complete sequence.
DQ583282 - Homo sapiens piRNA piR-50394, complete sequence.
DQ570842 - Homo sapiens piRNA piR-30954, complete sequence.
DQ582598 - Homo sapiens piRNA piR-32710, complete sequence.
DQ583200 - Homo sapiens piRNA piR-50312, complete sequence.
JD339024 - Sequence 320048 from Patent EP1572962.
JD471253 - Sequence 452277 from Patent EP1572962.
DQ573364 - Homo sapiens piRNA piR-41476, complete sequence.
DQ581982 - Homo sapiens piRNA piR-32094, complete sequence.
JD483784 - Sequence 464808 from Patent EP1572962.
JD339414 - Sequence 320438 from Patent EP1572962.
JD207314 - Sequence 188338 from Patent EP1572962.
JD207315 - Sequence 188339 from Patent EP1572962.
JD437730 - Sequence 418754 from Patent EP1572962.
AK307285 - Homo sapiens cDNA, FLJ97233.
JD375956 - Sequence 356980 from Patent EP1572962.
AK310769 - Homo sapiens cDNA, FLJ17811.
AK309732 - Homo sapiens cDNA, FLJ99773.
DQ597188 - Homo sapiens piRNA piR-35254, complete sequence.
DQ582680 - Homo sapiens piRNA piR-32792, complete sequence.
DQ582061 - Homo sapiens piRNA piR-32173, complete sequence.
DQ576060 - Homo sapiens piRNA piR-44172, complete sequence.
JD187730 - Sequence 168754 from Patent EP1572962.
JD215084 - Sequence 196108 from Patent EP1572962.
JD164150 - Sequence 145174 from Patent EP1572962.
JD221604 - Sequence 202628 from Patent EP1572962.
JD197230 - Sequence 178254 from Patent EP1572962.
JD470617 - Sequence 451641 from Patent EP1572962.
JD530488 - Sequence 511512 from Patent EP1572962.
JD102343 - Sequence 83367 from Patent EP1572962.
JD475363 - Sequence 456387 from Patent EP1572962.
JD115375 - Sequence 96399 from Patent EP1572962.
JD121574 - Sequence 102598 from Patent EP1572962.
JD317400 - Sequence 298424 from Patent EP1572962.
JD380025 - Sequence 361049 from Patent EP1572962.
JD060521 - Sequence 41545 from Patent EP1572962.
JD381668 - Sequence 362692 from Patent EP1572962.
JD288757 - Sequence 269781 from Patent EP1572962.
JD390077 - Sequence 371101 from Patent EP1572962.
JD253302 - Sequence 234326 from Patent EP1572962.
JD148424 - Sequence 129448 from Patent EP1572962.
JD121257 - Sequence 102281 from Patent EP1572962.
JD486640 - Sequence 467664 from Patent EP1572962.
JD039181 - Sequence 20205 from Patent EP1572962.
JD045280 - Sequence 26304 from Patent EP1572962.
JD469119 - Sequence 450143 from Patent EP1572962.
JD424838 - Sequence 405862 from Patent EP1572962.
JD196215 - Sequence 177239 from Patent EP1572962.
JD091658 - Sequence 72682 from Patent EP1572962.
JD067157 - Sequence 48181 from Patent EP1572962.
JD203956 - Sequence 184980 from Patent EP1572962.
JD517026 - Sequence 498050 from Patent EP1572962.
JD095113 - Sequence 76137 from Patent EP1572962.
JD078165 - Sequence 59189 from Patent EP1572962.
JD180309 - Sequence 161333 from Patent EP1572962.
JD337006 - Sequence 318030 from Patent EP1572962.
AK291684 - Homo sapiens cDNA FLJ78416 complete cds, highly similar to Homo sapiens leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 (LILRB3), mRNA.
JD419059 - Sequence 400083 from Patent EP1572962.
JD259440 - Sequence 240464 from Patent EP1572962.
JD068631 - Sequence 49655 from Patent EP1572962.
DQ597326 - Homo sapiens piRNA piR-35392, complete sequence.
DQ601249 - Homo sapiens piRNA piR-39315, complete sequence.
JD114357 - Sequence 95381 from Patent EP1572962.
JD417887 - Sequence 398911 from Patent EP1572962.
AK311170 - Homo sapiens cDNA, FLJ18212.
DQ585932 - Homo sapiens piRNA piR-53044, complete sequence.
DQ597197 - Homo sapiens piRNA piR-35263, complete sequence.
JD340368 - Sequence 321392 from Patent EP1572962.
JD200572 - Sequence 181596 from Patent EP1572962.
JD494966 - Sequence 475990 from Patent EP1572962.
JD159217 - Sequence 140241 from Patent EP1572962.
JD470200 - Sequence 451224 from Patent EP1572962.
JD340029 - Sequence 321053 from Patent EP1572962.
JD329675 - Sequence 310699 from Patent EP1572962.
KJ901011 - Synthetic construct Homo sapiens clone ccsbBroadEn_10405 LOC727751 gene, encodes complete protein.
JD109084 - Sequence 90108 from Patent EP1572962.
DQ583775 - Homo sapiens piRNA piR-50887, complete sequence.
JD216761 - Sequence 197785 from Patent EP1572962.
JD369004 - Sequence 350028 from Patent EP1572962.
DQ571663 - Homo sapiens piRNA piR-31775, complete sequence.
JD108908 - Sequence 89932 from Patent EP1572962.
DQ584793 - Homo sapiens piRNA piR-51905, complete sequence.
DQ584792 - Homo sapiens piRNA piR-51904, complete sequence.
DQ596277 - Homo sapiens piRNA piR-34343, complete sequence.
JD117661 - Sequence 98685 from Patent EP1572962.
JD256882 - Sequence 237906 from Patent EP1572962.
JD105023 - Sequence 86047 from Patent EP1572962.
JD187470 - Sequence 168494 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK026448, uc002bhh.4
UCSC ID: uc002bhh.5
RefSeq Accession: NR_026811

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK026448.1
exon count: 6CDS single in 3' UTR: no RNA size: 2546
ORF size: 0CDS single in intron: no Alignment % ID: 99.65
txCdsPredict score: 74.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 3
has end codon: no retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.