Human Gene AX746851 (uc022bcj.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ33892 fis, clone CTONG2007623.
Transcript (Including UTRs)
   Position: hg19 chr8:144,824,177-144,828,506 Size: 4,330 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr8:144,824,461-144,825,273 Size: 813 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:144,824,177-144,828,506)mRNA (may differ from genome)Protein (270 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
GeneCardsMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.31 RPKM in Esophagus - Mucosa
Total median expression: 89.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -96.90284-0.341 Picture PostScript Text
3' UTR -1132.933233-0.350 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK124079 - Homo sapiens cDNA FLJ42085 fis, clone TCOLN2002278.
AK125852 - Homo sapiens cDNA FLJ43864 fis, clone TESTI4007799.
KF773847 - Homo sapiens lung cancer associated long non-coding RNA 7, partial sequence.
DQ588155 - Homo sapiens piRNA piR-55267, complete sequence.
AK091211 - Homo sapiens cDNA FLJ33892 fis, clone CTONG2007623.
AX746851 - Sequence 376 from Patent EP1308459.
JD406500 - Sequence 387524 from Patent EP1572962.
JD466425 - Sequence 447449 from Patent EP1572962.
JD216561 - Sequence 197585 from Patent EP1572962.
JD425982 - Sequence 407006 from Patent EP1572962.
JD276683 - Sequence 257707 from Patent EP1572962.
JD360078 - Sequence 341102 from Patent EP1572962.
JD115572 - Sequence 96596 from Patent EP1572962.
JD364844 - Sequence 345868 from Patent EP1572962.
JD223742 - Sequence 204766 from Patent EP1572962.
JD100019 - Sequence 81043 from Patent EP1572962.
JD541720 - Sequence 522744 from Patent EP1572962.
JD473512 - Sequence 454536 from Patent EP1572962.
JD063207 - Sequence 44231 from Patent EP1572962.
JD334421 - Sequence 315445 from Patent EP1572962.
JD069448 - Sequence 50472 from Patent EP1572962.
JD163746 - Sequence 144770 from Patent EP1572962.
JD149056 - Sequence 130080 from Patent EP1572962.
JD514637 - Sequence 495661 from Patent EP1572962.
JD072640 - Sequence 53664 from Patent EP1572962.
JD467185 - Sequence 448209 from Patent EP1572962.
JD162040 - Sequence 143064 from Patent EP1572962.
JD548610 - Sequence 529634 from Patent EP1572962.
JD494541 - Sequence 475565 from Patent EP1572962.
JD293435 - Sequence 274459 from Patent EP1572962.
JD055421 - Sequence 36445 from Patent EP1572962.
JD126507 - Sequence 107531 from Patent EP1572962.
JD145966 - Sequence 126990 from Patent EP1572962.
JD508630 - Sequence 489654 from Patent EP1572962.
JD337532 - Sequence 318556 from Patent EP1572962.
JD273009 - Sequence 254033 from Patent EP1572962.
JD301216 - Sequence 282240 from Patent EP1572962.
JD052788 - Sequence 33812 from Patent EP1572962.
JD436968 - Sequence 417992 from Patent EP1572962.
JD170941 - Sequence 151965 from Patent EP1572962.
JD495626 - Sequence 476650 from Patent EP1572962.
JD523612 - Sequence 504636 from Patent EP1572962.
JD140666 - Sequence 121690 from Patent EP1572962.
JD198570 - Sequence 179594 from Patent EP1572962.
JD528132 - Sequence 509156 from Patent EP1572962.
JD234032 - Sequence 215056 from Patent EP1572962.
JD455478 - Sequence 436502 from Patent EP1572962.
JD060758 - Sequence 41782 from Patent EP1572962.
JD213913 - Sequence 194937 from Patent EP1572962.
JD201728 - Sequence 182752 from Patent EP1572962.
JD165306 - Sequence 146330 from Patent EP1572962.
JD543007 - Sequence 524031 from Patent EP1572962.
JD213417 - Sequence 194441 from Patent EP1572962.
JD126067 - Sequence 107091 from Patent EP1572962.
JD384811 - Sequence 365835 from Patent EP1572962.
JD409322 - Sequence 390346 from Patent EP1572962.
JD489363 - Sequence 470387 from Patent EP1572962.
JD074145 - Sequence 55169 from Patent EP1572962.
JD183313 - Sequence 164337 from Patent EP1572962.
JD356306 - Sequence 337330 from Patent EP1572962.
JD505738 - Sequence 486762 from Patent EP1572962.
JD107508 - Sequence 88532 from Patent EP1572962.
JD189337 - Sequence 170361 from Patent EP1572962.
DQ573860 - Homo sapiens piRNA piR-41972, complete sequence.
JD371775 - Sequence 352799 from Patent EP1572962.
JD251736 - Sequence 232760 from Patent EP1572962.
JD485491 - Sequence 466515 from Patent EP1572962.
JD483324 - Sequence 464348 from Patent EP1572962.
JD205493 - Sequence 186517 from Patent EP1572962.
JD565003 - Sequence 546027 from Patent EP1572962.
JD147160 - Sequence 128184 from Patent EP1572962.
JD413864 - Sequence 394888 from Patent EP1572962.
JD200444 - Sequence 181468 from Patent EP1572962.
JD313876 - Sequence 294900 from Patent EP1572962.
DQ575842 - Homo sapiens piRNA piR-43954, complete sequence.
JD450688 - Sequence 431712 from Patent EP1572962.
JD100497 - Sequence 81521 from Patent EP1572962.
JD150653 - Sequence 131677 from Patent EP1572962.
JD247284 - Sequence 228308 from Patent EP1572962.
JD539011 - Sequence 520035 from Patent EP1572962.
JD467098 - Sequence 448122 from Patent EP1572962.
JD228778 - Sequence 209802 from Patent EP1572962.
JD161611 - Sequence 142635 from Patent EP1572962.
JD523047 - Sequence 504071 from Patent EP1572962.
JD353149 - Sequence 334173 from Patent EP1572962.
JD353151 - Sequence 334175 from Patent EP1572962.
JD353153 - Sequence 334177 from Patent EP1572962.
JD258862 - Sequence 239886 from Patent EP1572962.
JD336404 - Sequence 317428 from Patent EP1572962.
JD070044 - Sequence 51068 from Patent EP1572962.
JD072142 - Sequence 53166 from Patent EP1572962.
JD108096 - Sequence 89120 from Patent EP1572962.
JD342182 - Sequence 323206 from Patent EP1572962.
JD312067 - Sequence 293091 from Patent EP1572962.
JD346557 - Sequence 327581 from Patent EP1572962.
JD272964 - Sequence 253988 from Patent EP1572962.
JD425254 - Sequence 406278 from Patent EP1572962.
JD506078 - Sequence 487102 from Patent EP1572962.
JD342585 - Sequence 323609 from Patent EP1572962.
JD213602 - Sequence 194626 from Patent EP1572962.
JD562380 - Sequence 543404 from Patent EP1572962.
JD266012 - Sequence 247036 from Patent EP1572962.
JD441229 - Sequence 422253 from Patent EP1572962.
JD494690 - Sequence 475714 from Patent EP1572962.
JD290410 - Sequence 271434 from Patent EP1572962.
JD259701 - Sequence 240725 from Patent EP1572962.
JD152956 - Sequence 133980 from Patent EP1572962.
JD527547 - Sequence 508571 from Patent EP1572962.
JD160747 - Sequence 141771 from Patent EP1572962.
JD281352 - Sequence 262376 from Patent EP1572962.
JD295677 - Sequence 276701 from Patent EP1572962.
JD281353 - Sequence 262377 from Patent EP1572962.
JD281396 - Sequence 262420 from Patent EP1572962.
JD491914 - Sequence 472938 from Patent EP1572962.
JD491985 - Sequence 473009 from Patent EP1572962.
JD513461 - Sequence 494485 from Patent EP1572962.
JD355283 - Sequence 336307 from Patent EP1572962.
JD535568 - Sequence 516592 from Patent EP1572962.
JD478418 - Sequence 459442 from Patent EP1572962.
JD463630 - Sequence 444654 from Patent EP1572962.
JD262219 - Sequence 243243 from Patent EP1572962.
JD454026 - Sequence 435050 from Patent EP1572962.
JD070424 - Sequence 51448 from Patent EP1572962.
JD398628 - Sequence 379652 from Patent EP1572962.
JD341501 - Sequence 322525 from Patent EP1572962.
JD414849 - Sequence 395873 from Patent EP1572962.
JD311826 - Sequence 292850 from Patent EP1572962.
JD081626 - Sequence 62650 from Patent EP1572962.
JD081628 - Sequence 62652 from Patent EP1572962.
JD081627 - Sequence 62651 from Patent EP1572962.
JD502811 - Sequence 483835 from Patent EP1572962.
JD045055 - Sequence 26079 from Patent EP1572962.
JD293678 - Sequence 274702 from Patent EP1572962.
JD555572 - Sequence 536596 from Patent EP1572962.
JD566574 - Sequence 547598 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc022bcj.1
Representative RNA: AX746851

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AX746851.1
exon count: 1CDS single in 3' UTR: no RNA size: 3866
ORF size: 813CDS single in intron: no Alignment % ID: 99.66
txCdsPredict score: 1005.00frame shift in genome: no % Coverage: 99.92
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.