Human Gene ZNF205-AS1 (uc010btd.2) Description and Page Index
  Description: Homo sapiens ZNF205 antisense RNA 1 (ZNF205-AS1), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr16:3,160,461-3,162,490 Size: 2,030 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr16:3,160,716-3,162,430 Size: 1,715 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesMicroarray ExpressionRNA StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:3,160,461-3,162,490)mRNA (may differ from genome)Protein (128 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsHGNCLynxMGI
PubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.4060-0.490 Picture PostScript Text
3' UTR -78.69255-0.309 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC001809 - Homo sapiens cDNA clone IMAGE:2959625.
BC001824 - Homo sapiens cDNA clone IMAGE:2959625.
BC121099 - Homo sapiens hypothetical LOC81854, mRNA (cDNA clone IMAGE:40120169).
BC121100 - Homo sapiens hypothetical LOC81854, mRNA (cDNA clone IMAGE:40120170).
BC020202 - Homo sapiens, clone IMAGE:4871634, mRNA.
KJ900867 - Synthetic construct Homo sapiens clone ccsbBroadEn_10261 MGC3771 gene, encodes complete protein.
JD219133 - Sequence 200157 from Patent EP1572962.
JD398832 - Sequence 379856 from Patent EP1572962.
JD070600 - Sequence 51624 from Patent EP1572962.
JD150921 - Sequence 131945 from Patent EP1572962.
JD197929 - Sequence 178953 from Patent EP1572962.
JD212548 - Sequence 193572 from Patent EP1572962.
JD407465 - Sequence 388489 from Patent EP1572962.
JD163569 - Sequence 144593 from Patent EP1572962.
JD165170 - Sequence 146194 from Patent EP1572962.
JD154046 - Sequence 135070 from Patent EP1572962.
JD198721 - Sequence 179745 from Patent EP1572962.
JD043508 - Sequence 24532 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC020202
UCSC ID: uc010btd.2
RefSeq Accession: NR_024167

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC020202.1
exon count: 2CDS single in 3' UTR: no RNA size: 684
ORF size: 387CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 880.00frame shift in genome: no % Coverage: 95.03
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.