Human Gene ZNF720 (uc002ecq.3) Description and Page Index
  Description: Homo sapiens zinc finger protein 720 (ZNF720), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:31,724,566-31,771,207 Size: 46,642 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr16:31,724,761-31,767,040 Size: 42,280 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsGenetic AssociationsGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:31,724,566-31,771,207)mRNA (may differ from genome)Protein (543 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsGeneNetworkH-INV
HGNCLynxMGIPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: F5GYB6_HUMAN
DESCRIPTION: SubName: Full=Putative protein ZNF720;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ZNF720
CDC HuGE Published Literature: ZNF720

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.62 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 75.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -76.90195-0.394 Picture PostScript Text
3' UTR -1046.094167-0.251 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type
PF01352 - KRAB box
PF13912 - C2H2-type zinc finger

SCOP Domains:
48695 - Multiheme cytochromes
109640 - KRAB domain (Kruppel-associated box, Pfam 01352)
57667 - C2H2 and C2HC zinc fingers

ModBase Predicted Comparative 3D Structure on F5GYB6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC055408 - Homo sapiens zinc finger protein 720, mRNA (cDNA clone MGC:62019 IMAGE:3684126), complete cds.
AL832197 - Homo sapiens mRNA; cDNA DKFZp686F052 (from clone DKFZp686F052).
AK299345 - Homo sapiens cDNA FLJ61641 complete cds, moderately similar to Zinc finger protein 267.
AK128671 - Homo sapiens cDNA FLJ46834 fis, clone UTERU2027369.
BC018134 - Homo sapiens zinc finger protein 720, mRNA (cDNA clone MGC:9313 IMAGE:3912539), complete cds.
AX721120 - Sequence 80 from Patent WO0220754.
JD089344 - Sequence 70368 from Patent EP1572962.
KJ895389 - Synthetic construct Homo sapiens clone ccsbBroadEn_04783 ZNF720 gene, encodes complete protein.
JD314879 - Sequence 295903 from Patent EP1572962.
JD314877 - Sequence 295901 from Patent EP1572962.
JD314878 - Sequence 295902 from Patent EP1572962.
JD314879 - Sequence 295903 from Patent EP1572962.
JD314877 - Sequence 295901 from Patent EP1572962.
JD314878 - Sequence 295902 from Patent EP1572962.
JD314879 - Sequence 295903 from Patent EP1572962.
JD314877 - Sequence 295901 from Patent EP1572962.
JD314878 - Sequence 295902 from Patent EP1572962.
JD314875 - Sequence 295899 from Patent EP1572962.
JD314871 - Sequence 295895 from Patent EP1572962.
JD314877 - Sequence 295901 from Patent EP1572962.
JD314878 - Sequence 295902 from Patent EP1572962.
JD183381 - Sequence 164405 from Patent EP1572962.
JD060828 - Sequence 41852 from Patent EP1572962.
JD052524 - Sequence 33548 from Patent EP1572962.
JD038264 - Sequence 19288 from Patent EP1572962.
JD350886 - Sequence 331910 from Patent EP1572962.
JD286115 - Sequence 267139 from Patent EP1572962.
JD567011 - Sequence 548035 from Patent EP1572962.
JD240676 - Sequence 221700 from Patent EP1572962.
JD564898 - Sequence 545922 from Patent EP1572962.
JD240551 - Sequence 221575 from Patent EP1572962.
JD062081 - Sequence 43105 from Patent EP1572962.
JD506804 - Sequence 487828 from Patent EP1572962.
JD528282 - Sequence 509306 from Patent EP1572962.
JD172480 - Sequence 153504 from Patent EP1572962.
JD298755 - Sequence 279779 from Patent EP1572962.
JD283359 - Sequence 264383 from Patent EP1572962.
JD497723 - Sequence 478747 from Patent EP1572962.
JD542666 - Sequence 523690 from Patent EP1572962.
JD212616 - Sequence 193640 from Patent EP1572962.
JD246754 - Sequence 227778 from Patent EP1572962.
JD238275 - Sequence 219299 from Patent EP1572962.
JD114212 - Sequence 95236 from Patent EP1572962.
JD159022 - Sequence 140046 from Patent EP1572962.
JD208819 - Sequence 189843 from Patent EP1572962.
JD473411 - Sequence 454435 from Patent EP1572962.
JD050345 - Sequence 31369 from Patent EP1572962.
JD221752 - Sequence 202776 from Patent EP1572962.
JD450854 - Sequence 431878 from Patent EP1572962.
JD099944 - Sequence 80968 from Patent EP1572962.
JD537342 - Sequence 518366 from Patent EP1572962.
JD135932 - Sequence 116956 from Patent EP1572962.
JD194739 - Sequence 175763 from Patent EP1572962.
JD135933 - Sequence 116957 from Patent EP1572962.
JD514874 - Sequence 495898 from Patent EP1572962.
JD340170 - Sequence 321194 from Patent EP1572962.
JD471628 - Sequence 452652 from Patent EP1572962.
JD452735 - Sequence 433759 from Patent EP1572962.
JD201348 - Sequence 182372 from Patent EP1572962.
JD529963 - Sequence 510987 from Patent EP1572962.
JD308555 - Sequence 289579 from Patent EP1572962.
JD059377 - Sequence 40401 from Patent EP1572962.
JD499046 - Sequence 480070 from Patent EP1572962.
JD362893 - Sequence 343917 from Patent EP1572962.
JD312894 - Sequence 293918 from Patent EP1572962.
JD081992 - Sequence 63016 from Patent EP1572962.
JD236228 - Sequence 217252 from Patent EP1572962.
JD566263 - Sequence 547287 from Patent EP1572962.
JD561504 - Sequence 542528 from Patent EP1572962.
JD421344 - Sequence 402368 from Patent EP1572962.
JD300052 - Sequence 281076 from Patent EP1572962.
JD552787 - Sequence 533811 from Patent EP1572962.
JD302529 - Sequence 283553 from Patent EP1572962.
JD507683 - Sequence 488707 from Patent EP1572962.
JD301419 - Sequence 282443 from Patent EP1572962.
JD179867 - Sequence 160891 from Patent EP1572962.
JD340656 - Sequence 321680 from Patent EP1572962.
JD286594 - Sequence 267618 from Patent EP1572962.
JD511450 - Sequence 492474 from Patent EP1572962.
JD112506 - Sequence 93530 from Patent EP1572962.
JD294052 - Sequence 275076 from Patent EP1572962.
JD472252 - Sequence 453276 from Patent EP1572962.
JD372947 - Sequence 353971 from Patent EP1572962.
JD171161 - Sequence 152185 from Patent EP1572962.
JD366465 - Sequence 347489 from Patent EP1572962.
JD502672 - Sequence 483696 from Patent EP1572962.
JD307723 - Sequence 288747 from Patent EP1572962.
JD044267 - Sequence 25291 from Patent EP1572962.
JD311420 - Sequence 292444 from Patent EP1572962.
JD343264 - Sequence 324288 from Patent EP1572962.
JD302280 - Sequence 283304 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AL832197, F5GYB6, F5GYB6_HUMAN
UCSC ID: uc002ecq.3
RefSeq Accession: NM_001130913
Protein: F5GYB6

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AL832197.1
exon count: 5CDS single in 3' UTR: no RNA size: 6049
ORF size: 1632CDS single in intron: no Alignment % ID: 99.82
txCdsPredict score: 3357.00frame shift in genome: no % Coverage: 99.02
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.