Human Gene LOC392232 (uc022avu.1) Description and Page Index
  Description: Homo sapiens transient receptor potential cation channel, subfamily A, member 1 pseudogene (LOC392232), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr8:73,117,534-73,163,869 Size: 46,336 Total Exon Count: 21 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:73,117,534-73,163,869)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.53 RPKM in Stomach
Total median expression: 2.13 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK309726 - Homo sapiens cDNA, FLJ99767.
JD542260 - Sequence 523284 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_033867
UCSC ID: uc022avu.1
RefSeq Accession: NR_033867

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_033867.1
exon count: 21CDS single in 3' UTR: no RNA size: 2678
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 279.00frame shift in genome: no % Coverage: 99.89
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 2
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.