Human Gene LOC642776 (uc004eqg.1) Description and Page Index
  Description: Homo sapiens hypothetical protein LOC642776, mRNA (cDNA clone IMAGE:3533146), partial cds.
Transcript (Including UTRs)
   Position: hg19 chrX:115,033,604-115,085,422 Size: 51,819 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:115,033,604-115,085,422)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
LynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.28 RPKM in Thyroid
Total median expression: 3.01 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  KM192214 - Homo sapiens clone DP13-12 DANT2 long non-coding RNA, complete sequence.
KM192215 - Homo sapiens clone DP31-2 DANT2 long non-coding RNA, complete sequence.
KM192216 - Homo sapiens clone DP_FB_2 DANT2 long non-coding RNA, complete sequence.
KM192217 - Homo sapiens clone DP_FB_5 DANT2 long non-coding RNA, complete sequence.
BC003645 - Homo sapiens hypothetical protein LOC642776, mRNA (cDNA clone IMAGE:3533146), partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: BC003645
UCSC ID: uc004eqg.1
Representative RNA: BC003645

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC003645.1
exon count: 3CDS single in 3' UTR: no RNA size: 2461
ORF size: 0CDS single in intron: no Alignment % ID: 99.96
txCdsPredict score: 112.50frame shift in genome: no % Coverage: 84.44
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.