Human Gene AX746787 (uc002imj.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ33800 fis, clone CTONG2000279.
Transcript (Including UTRs)
   Position: hg19 chr17:45,956,838-45,959,764 Size: 2,927 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr17:45,959,413-45,959,673 Size: 261 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:45,956,838-45,959,764)mRNA (may differ from genome)Protein (86 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
GeneCardsMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.08 RPKM in Pituitary
Total median expression: 1.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.0091-0.209 Picture PostScript Text
3' UTR -1228.712575-0.477 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK091119 - Homo sapiens cDNA FLJ33800 fis, clone CTONG2000279.
AX746787 - Sequence 312 from Patent EP1308459.
JD192794 - Sequence 173818 from Patent EP1572962.
JD336275 - Sequence 317299 from Patent EP1572962.
JD564639 - Sequence 545663 from Patent EP1572962.
JD235923 - Sequence 216947 from Patent EP1572962.
JD551042 - Sequence 532066 from Patent EP1572962.
JD562386 - Sequence 543410 from Patent EP1572962.
JD093253 - Sequence 74277 from Patent EP1572962.
JD207982 - Sequence 189006 from Patent EP1572962.
JD449862 - Sequence 430886 from Patent EP1572962.
JD498300 - Sequence 479324 from Patent EP1572962.
JD230834 - Sequence 211858 from Patent EP1572962.
JD482576 - Sequence 463600 from Patent EP1572962.
JD116945 - Sequence 97969 from Patent EP1572962.
JD435333 - Sequence 416357 from Patent EP1572962.
JD435334 - Sequence 416358 from Patent EP1572962.
JD557589 - Sequence 538613 from Patent EP1572962.
JD238591 - Sequence 219615 from Patent EP1572962.
JD239456 - Sequence 220480 from Patent EP1572962.
JD083658 - Sequence 64682 from Patent EP1572962.
JD110197 - Sequence 91221 from Patent EP1572962.
JD516184 - Sequence 497208 from Patent EP1572962.
JD487240 - Sequence 468264 from Patent EP1572962.
JD545743 - Sequence 526767 from Patent EP1572962.
JD089274 - Sequence 70298 from Patent EP1572962.
JD243908 - Sequence 224932 from Patent EP1572962.
JD337383 - Sequence 318407 from Patent EP1572962.
JD178736 - Sequence 159760 from Patent EP1572962.
JD373431 - Sequence 354455 from Patent EP1572962.
JD457219 - Sequence 438243 from Patent EP1572962.
JD335430 - Sequence 316454 from Patent EP1572962.
JD443034 - Sequence 424058 from Patent EP1572962.
JD558847 - Sequence 539871 from Patent EP1572962.
JD201471 - Sequence 182495 from Patent EP1572962.
JD436198 - Sequence 417222 from Patent EP1572962.
JD079812 - Sequence 60836 from Patent EP1572962.
JD164518 - Sequence 145542 from Patent EP1572962.
JD144224 - Sequence 125248 from Patent EP1572962.
JD461926 - Sequence 442950 from Patent EP1572962.
JD082821 - Sequence 63845 from Patent EP1572962.
JD237729 - Sequence 218753 from Patent EP1572962.
JD338291 - Sequence 319315 from Patent EP1572962.
JD137575 - Sequence 118599 from Patent EP1572962.
JD362716 - Sequence 343740 from Patent EP1572962.
JD439683 - Sequence 420707 from Patent EP1572962.
JD477914 - Sequence 458938 from Patent EP1572962.
JD515203 - Sequence 496227 from Patent EP1572962.
JD334812 - Sequence 315836 from Patent EP1572962.
JD275509 - Sequence 256533 from Patent EP1572962.
JD339541 - Sequence 320565 from Patent EP1572962.
JD073728 - Sequence 54752 from Patent EP1572962.
JD333462 - Sequence 314486 from Patent EP1572962.
JD504909 - Sequence 485933 from Patent EP1572962.
JD091438 - Sequence 72462 from Patent EP1572962.
JD207614 - Sequence 188638 from Patent EP1572962.
JD068501 - Sequence 49525 from Patent EP1572962.
JD397187 - Sequence 378211 from Patent EP1572962.
JD069834 - Sequence 50858 from Patent EP1572962.
JD426744 - Sequence 407768 from Patent EP1572962.
JD255954 - Sequence 236978 from Patent EP1572962.
JD107858 - Sequence 88882 from Patent EP1572962.
JD082910 - Sequence 63934 from Patent EP1572962.
JD186420 - Sequence 167444 from Patent EP1572962.
JD282722 - Sequence 263746 from Patent EP1572962.
JD380382 - Sequence 361406 from Patent EP1572962.
JD248648 - Sequence 229672 from Patent EP1572962.
JD316625 - Sequence 297649 from Patent EP1572962.
JD278758 - Sequence 259782 from Patent EP1572962.
JD513360 - Sequence 494384 from Patent EP1572962.
JD266121 - Sequence 247145 from Patent EP1572962.
JD172978 - Sequence 154002 from Patent EP1572962.
JD051408 - Sequence 32432 from Patent EP1572962.
JD311471 - Sequence 292495 from Patent EP1572962.
JD385860 - Sequence 366884 from Patent EP1572962.
JD500018 - Sequence 481042 from Patent EP1572962.
JD139417 - Sequence 120441 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc002imj.1
Representative RNA: AX746787

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AX746787.1
exon count: 1CDS single in 3' UTR: no RNA size: 2927
ORF size: 261CDS single in intron: no Alignment % ID: 99.45
txCdsPredict score: 652.00frame shift in genome: no % Coverage: 99.97
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.