Human Gene MUC5AC (uc001lsz.3) Description and Page Index
  Description: Homo sapiens mRNA for MUC5AC protein (tracheal), partial.
Transcript (Including UTRs)
   Position: hg19 chr11:1,213,090-1,222,366 Size: 9,277 Total Exon Count: 19 Strand: +


Page IndexSequence and LinksGenetic AssociationsMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:1,213,090-1,222,366)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaCGAP
EnsemblExonPrimerH-INVHGNCLynxPubMed
Stanford SOURCETreefamWikipedia

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): MUC5AC
CDC HuGE Published Literature: MUC5AC
Positive Disease Associations: Albumins
Related Studies:
  1. Albumins
    , , . [PubMed 0]

-  MalaCards Disease Associations
  MalaCards Gene Search: MUC5AC
Diseases sorted by gene-association score: pseudomyxoma peritonei (8), pancreatic cancer (7), stomach cancer (6), colorectal cancer (5), mucoepidermoid carcinoma (5), otitis media (5), anal canal adenocarcinoma (5), biliary papillomatosis (4), cystic fibrosis (4), adenoma (4), pancreatic mucinous cystadenoma (4), anal gland adenocarcinoma (3), dry eye syndrome (3), cap polyposis (3), cholangiocarcinoma, susceptibility to (3), intrahepatic cholangiocarcinoma (3), mucinous intrahepatic cholangiocarcinoma (3), breast mucoepidermoid carcinoma (3), barrett esophagus/esophageal adenocarcinoma (3), meconium ileus (2), anus adenocarcinoma (2), atopic keratoconjunctivitis (2), colorectal cancer 1 (2), acinar cell cystadenocarcinoma (2), limbal stem cell deficiency (2), complete androgen insensitivity syndrome (2), asthma (2), epstein-barr virus-associated gastric carcinoma (2), small intestinal adenocarcinoma (2), bile duct mucoepidermoid carcinoma (2), hidradenocarcinoma (2), panophthalmitis (2), polyposis, skin pigmentation, alopecia, and fingernail changes (2), bile duct cystadenocarcinoma (2), chronic ethmoiditis (2), middle ear disease (2), lacrimal apparatus disease (2), bile duct adenocarcinoma (1), pylorospasm (1), clear cell adenoma (1), filamentary keratitis (1), bronchial disease (1), conjunctival nevus (1), respiratory system disease (1), mucinous ovarian cystadenoma (1), gastric cancer, somatic (1), superior mesenteric artery syndrome (1), pancreatic cystadenocarcinoma (1), ethmoid sinusitis (1), conjunctival degeneration (1), listeria meningitis (1), colloid carcinoma of the pancreas (1), gastric tubular adenocarcinoma (1), central nervous system tuberculosis (1), purulent endophthalmitis (1), pinguecula (1), cystitis cystica (1), chronic maxillary sinusitis (1), ovarian mucinous neoplasm (1), critical illness polyneuropathy (1), breast metaplastic carcinoma (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 230.92 RPKM in Stomach
Total median expression: 232.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AJ001402 - Homo sapiens mRNA for MUC5AC protein (tracheal), partial.
Z34277 - H.sapiens (JER47) MUC5AC mRNA for mucin (partial).
U06711 - Homo sapiens tracheobronchial mucin (MUC5) mRNA, partial cds.
Z48314 - H.sapiens mRNA for apomucin.
Z34279 - H.sapiens (JER62) MUC5AC mRNA for mucin (partial).
BC033831 - Homo sapiens mucin 5AC, oligomeric mucus/gel-forming, mRNA (cDNA clone IMAGE:3852667), partial cds.
AL833060 - Homo sapiens mRNA; cDNA DKFZp666O039 (from clone DKFZp666O039).

-  Other Names for This Gene
  Alternate Gene Symbols: Z48314
UCSC ID: uc001lsz.3
Representative RNA: Z48314

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: yes RNA accession: Z48314.1
exon count: 19CDS single in 3' UTR: no RNA size: 3289
ORF size: 0CDS single in intron: no Alignment % ID: 99.70
txCdsPredict score: 1004.00frame shift in genome: no % Coverage: 99.97
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.