Human Gene LOC150935 (uc021vzc.2) Description and Page Index
  Description: Homo sapiens uncharacterized LOC150935 (LOC150935), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr2:240,684,554-240,722,356 Size: 37,803 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr2:240,702,115-240,721,871 Size: 19,757 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:240,684,554-240,722,356)mRNA (may differ from genome)Protein (113 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.08 RPKM in Brain - Cortex
Total median expression: 0.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.41190-0.292 Picture PostScript Text
3' UTR -121.80485-0.251 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK056439 - Homo sapiens cDNA FLJ31877 fis, clone NT2RP7002554.
JD101052 - Sequence 82076 from Patent EP1572962.
JD226567 - Sequence 207591 from Patent EP1572962.
JD102579 - Sequence 83603 from Patent EP1572962.
JD126324 - Sequence 107348 from Patent EP1572962.
JD377256 - Sequence 358280 from Patent EP1572962.
JD263644 - Sequence 244668 from Patent EP1572962.
JD551218 - Sequence 532242 from Patent EP1572962.
JD165061 - Sequence 146085 from Patent EP1572962.
JD117826 - Sequence 98850 from Patent EP1572962.
JD282447 - Sequence 263471 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_037808, uc021vzc.1
UCSC ID: uc021vzc.2
RefSeq Accession: NR_037808

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_037808.1
exon count: 3CDS single in 3' UTR: no RNA size: 1019
ORF size: 342CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 742.50frame shift in genome: no % Coverage: 99.80
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.