Human Gene BC039493 (uc009wxq.3) Description and Page Index
  Description: Homo sapiens, clone IMAGE:5548255, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr1:181,143,620-181,151,342 Size: 7,723 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr1:181,144,489-181,151,213 Size: 6,725 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr1:181,143,620-181,151,342)mRNA (may differ from genome)Protein (100 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaCGAPEnsembl
ExonPrimerGeneCardsMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.51 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 0.93 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.50108-0.273 Picture PostScript Text
3' UTR -25.90129-0.201 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  BC039493 - Homo sapiens, clone IMAGE:5548255, mRNA.
JD448683 - Sequence 429707 from Patent EP1572962.
JD353143 - Sequence 334167 from Patent EP1572962.
JD258857 - Sequence 239881 from Patent EP1572962.
JD152374 - Sequence 133398 from Patent EP1572962.
JD407693 - Sequence 388717 from Patent EP1572962.
JD213453 - Sequence 194477 from Patent EP1572962.
JD463348 - Sequence 444372 from Patent EP1572962.
JD322273 - Sequence 303297 from Patent EP1572962.
DQ578914 - Homo sapiens piRNA piR-47026, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: uc009wxq.2
UCSC ID: uc009wxq.3
Representative RNA: BC039493

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: BC039493.1
exon count: 3CDS single in 3' UTR: no RNA size: 553
ORF size: 303CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 806.00frame shift in genome: no % Coverage: 97.65
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.