Human Gene MIER1 (uc001dde.2) Description and Page Index
  Description: Homo sapiens mesoderm induction early response 1 homolog (Xenopus laevis) (MIER1), transcript variant 2, mRNA.
RefSeq Summary (NM_001077700): This gene encodes a protein that was first identified in Xenopus laevis by its role in a mesoderm induction early response (MIER). The encoded protein functions as a transcriptional regulator. Alternatively spliced transcript variants encode multiple isoforms, some of which lack a C-terminal nuclear localization signal. [provided by RefSeq, May 2013].
Transcript (Including UTRs)
   Position: hg19 chr1:67,390,578-67,454,302 Size: 63,725 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr1:67,390,712-67,450,583 Size: 59,872 Coding Exon Count: 14 

Page IndexSequence and LinksMalaCardsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:67,390,578-67,454,302)mRNA (may differ from genome)Protein (565 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCHPRDLynxMGIOMIM
PubMedStanford SOURCETreefamUniProtKBWikipedia

-  MalaCards Disease Associations
  MalaCards Gene Search: MIER1
Diseases sorted by gene-association score: regular astigmatism (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.52 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 248.01 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -63.30134-0.472 Picture PostScript Text
3' UTR -856.173719-0.230 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00249 - Myb-like DNA-binding domain
PF01448 - ELM2 domain

SCOP Domains:
46689 - Homeodomain-like

ModBase Predicted Comparative 3D Structure on Q8N108-12
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK302061 - Homo sapiens cDNA FLJ60095 complete cds, highly similar to Mesoderm induction early response protein 1.
AL831987 - Homo sapiens mRNA; cDNA DKFZp451G243 (from clone DKFZp451G243).
LP895147 - Sequence 11 from Patent EP3253886.
AY124189 - Homo sapiens mesoderm induction early response 1 N1-beta-i (MIER1) mRNA, complete cds; alternatively spliced.
AY124190 - Homo sapiens mesoderm induction early response 1 N2-beta-i (MIER1) mRNA, complete cds; alternatively spliced.
AY124186 - Homo sapiens mesoderm induction early response 1 N1-alpha (MIER1) mRNA, complete cds; alternatively spliced.
AY124187 - Homo sapiens mesoderm induction early response 1 N2-alpha (MIER1) mRNA, complete cds; alternatively spliced.
AY124192 - Homo sapiens mesoderm induction early response 1 N1-beta-ii (MIER1) mRNA, complete cds; alternatively spliced.
AY124193 - Homo sapiens mesoderm induction early response 1 N2-beta-ii (MIER1) mRNA, complete cds; alternatively spliced.
AF515447 - Homo sapiens mesoderm induction early response 1 N2-beta mRNA, complete cds, alternatively spliced.
AF515448 - Homo sapiens mesoderm induction early response 1 N1-beta mRNA, complete cds, alternatively spliced.
BC066898 - Homo sapiens mesoderm induction early response 1 homolog (Xenopus laevis), mRNA (cDNA clone IMAGE:4822246), complete cds.
JD472142 - Sequence 453166 from Patent EP1572962.
AK307717 - Homo sapiens cDNA, FLJ97665.
JD419182 - Sequence 400206 from Patent EP1572962.
BC108726 - Homo sapiens mesoderm induction early response 1 homolog (Xenopus laevis), mRNA (cDNA clone MGC:131940 IMAGE:5194296), complete cds.
CR627441 - Homo sapiens mRNA; cDNA DKFZp781G0451 (from clone DKFZp781G0451).
AB590466 - Synthetic construct DNA, clone: pFN21AE1157, Homo sapiens MIER1 gene for mesoderm induction early response 1 homolog, without stop codon, in Flexi system.
BC125217 - Homo sapiens mesoderm induction early response 1 homolog (Xenopus laevis), mRNA (cDNA clone MGC:150640 IMAGE:40123797), complete cds.
BC125218 - Homo sapiens mesoderm induction early response 1 homolog (Xenopus laevis), mRNA (cDNA clone MGC:150641 IMAGE:40123803), complete cds.
JD464900 - Sequence 445924 from Patent EP1572962.
AY124191 - Homo sapiens mesoderm induction early response 1 N3-beta-i (MIER1) mRNA, complete cds; alternatively spliced.
AY124188 - Homo sapiens mesoderm induction early response 1 N3-alpha (MIER1) mRNA, complete cds; alternatively spliced.
AY124194 - Homo sapiens mesoderm induction early response 1 N3-beta-ii (MIER1) mRNA, complete cds; alternatively spliced.
AF515446 - Homo sapiens mesoderm induction early response 1 N3-beta mRNA, complete cds, alternatively spliced.
BC017423 - Homo sapiens mesoderm induction early response 1 homolog (Xenopus laevis), mRNA (cDNA clone IMAGE:4692746), complete cds.
AB046830 - Homo sapiens mRNA for KIAA1610 protein, partial cds.
KJ906282 - Synthetic construct Homo sapiens clone ccsbBroadEn_15952 MIER1 gene, encodes complete protein.
KJ894451 - Synthetic construct Homo sapiens clone ccsbBroadEn_03845 MIER1 gene, encodes complete protein.
JD168301 - Sequence 149325 from Patent EP1572962.
JD303181 - Sequence 284205 from Patent EP1572962.
JD313428 - Sequence 294452 from Patent EP1572962.
JD524416 - Sequence 505440 from Patent EP1572962.
JD363333 - Sequence 344357 from Patent EP1572962.
JD491506 - Sequence 472530 from Patent EP1572962.
JD109915 - Sequence 90939 from Patent EP1572962.
JD429404 - Sequence 410428 from Patent EP1572962.
JD275185 - Sequence 256209 from Patent EP1572962.
JD495129 - Sequence 476153 from Patent EP1572962.
JD328924 - Sequence 309948 from Patent EP1572962.
JD163413 - Sequence 144437 from Patent EP1572962.
JD490300 - Sequence 471324 from Patent EP1572962.
JD185021 - Sequence 166045 from Patent EP1572962.
JD039819 - Sequence 20843 from Patent EP1572962.
JD312921 - Sequence 293945 from Patent EP1572962.
JD516771 - Sequence 497795 from Patent EP1572962.
JD091189 - Sequence 72213 from Patent EP1572962.
JD048500 - Sequence 29524 from Patent EP1572962.
JD109384 - Sequence 90408 from Patent EP1572962.
JD091050 - Sequence 72074 from Patent EP1572962.
JD196198 - Sequence 177222 from Patent EP1572962.
JD525477 - Sequence 506501 from Patent EP1572962.
JD101320 - Sequence 82344 from Patent EP1572962.
JD358016 - Sequence 339040 from Patent EP1572962.
JD221706 - Sequence 202730 from Patent EP1572962.
JD565010 - Sequence 546034 from Patent EP1572962.
JD126465 - Sequence 107489 from Patent EP1572962.
JD251701 - Sequence 232725 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: KIAA1610, NM_001077700, NP_001139584, Q8N108-12
UCSC ID: uc001dde.2
RefSeq Accession: NM_001077700
Protein: Q8N108-12, splice isoform of Q8N108 CCDS: CCDS53326.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001077700.2
exon count: 14CDS single in 3' UTR: no RNA size: 5569
ORF size: 1698CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3514.00frame shift in genome: no % Coverage: 99.68
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 3967# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.