Human Gene PATL2 (uc031qrq.1) Description and Page Index
  Description: Homo sapiens protein associated with topoisomerase II homolog 2 (yeast) (PATL2), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr15:44,966,961-45,003,514 Size: 36,554 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr15:44,968,714-45,003,392 Size: 34,679 Coding Exon Count: 2 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:44,966,961-45,003,514)mRNA (may differ from genome)Protein (74 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsH-INVHGNC
LynxMGIPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.86 RPKM in Spleen
Total median expression: 25.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -47.20122-0.387 Picture PostScript Text
3' UTR -625.361753-0.357 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC036924 - Homo sapiens protein associated with topoisomerase II homolog 2 (yeast), mRNA (cDNA clone IMAGE:5227850), with apparent retained intron.
JD315236 - Sequence 296260 from Patent EP1572962.
AK130783 - Homo sapiens cDNA FLJ27273 fis, clone TMS00761.
JD270505 - Sequence 251529 from Patent EP1572962.
JD465986 - Sequence 447010 from Patent EP1572962.
JD445221 - Sequence 426245 from Patent EP1572962.
JD065971 - Sequence 46995 from Patent EP1572962.
JD235268 - Sequence 216292 from Patent EP1572962.
JD079226 - Sequence 60250 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK130783, uc010uej.2
UCSC ID: uc031qrq.1
RefSeq Accession: NM_001145112

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK130783.1
exon count: 2CDS single in 3' UTR: no RNA size: 2100
ORF size: 225CDS single in intron: no Alignment % ID: 99.86
txCdsPredict score: 629.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 1712# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.