Human Gene NUPL2 (uc011jyx.3) Description and Page Index
  Description: Homo sapiens nucleoporin like 2 (NUPL2), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr7:23,234,022-23,240,630 Size: 6,609 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr7:23,239,817-23,240,272 Size: 456 Coding Exon Count: 1 

Page IndexSequence and LinksGenetic AssociationsMalaCardsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:23,234,022-23,240,630)mRNA (may differ from genome)Protein (151 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMGIPubMed
Stanford SOURCEWikipedia

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): NUPL2
CDC HuGE Published Literature: NUPL2

-  MalaCards Disease Associations
  MalaCards Gene Search: NUPL2
Diseases sorted by gene-association score: hiv-1 (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.98 RPKM in Testis
Total median expression: 478.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -461.081715-0.269 Picture PostScript Text
3' UTR -68.40358-0.191 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF383950 - JP 2014500723-A/191453: Polycomb-Associated Non-Coding RNAs.
AK312991 - Homo sapiens cDNA, FLJ93452, highly similar to Homo sapiens nucleoporin like 2 (NUPL2), mRNA.
U97198 - Homo sapiens CG1 mRNA, complete cds.
BC005327 - Homo sapiens nucleoporin like 2, mRNA (cDNA clone MGC:12413 IMAGE:3510844), complete cds.
BC107583 - Homo sapiens nucleoporin like 2, mRNA (cDNA clone MGC:111148 IMAGE:6453869), complete cds.
BT007409 - Homo sapiens nucleoporin-like protein 1 mRNA, complete cds.
KJ902199 - Synthetic construct Homo sapiens clone ccsbBroadEn_11593 NUPL2 gene, encodes complete protein.
AK298183 - Homo sapiens cDNA FLJ60750 complete cds, highly similar to Nucleoporin-like 2.
BC039333 - Homo sapiens nucleoporin like 2, mRNA (cDNA clone IMAGE:5267926), complete cds.
JD036344 - Sequence 17368 from Patent EP1572962.
JD345681 - Sequence 326705 from Patent EP1572962.
JD225364 - Sequence 206388 from Patent EP1572962.
LF357825 - JP 2014500723-A/165328: Polycomb-Associated Non-Coding RNAs.
AK124359 - Homo sapiens cDNA FLJ42368 fis, clone UTERU2029953.
LF357829 - JP 2014500723-A/165332: Polycomb-Associated Non-Coding RNAs.
MA619527 - JP 2018138019-A/191453: Polycomb-Associated Non-Coding RNAs.
MA593402 - JP 2018138019-A/165328: Polycomb-Associated Non-Coding RNAs.
MA593406 - JP 2018138019-A/165332: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: BC039333, NM_007342, NP_031368, uc011jyx.2
UCSC ID: uc011jyx.3
RefSeq Accession: NM_007342

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC039333.1
exon count: 4CDS single in 3' UTR: no RNA size: 2543
ORF size: 456CDS single in intron: no Alignment % ID: 99.96
txCdsPredict score: 757.00frame shift in genome: no % Coverage: 99.45
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 1436# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.