Human Gene ZCCHC10 (uc003kyg.3) Description and Page Index
  Description: Homo sapiens zinc finger, CCHC domain containing 10 (ZCCHC10), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr5:132,332,678-132,362,240 Size: 29,563 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr5:132,334,275-132,362,229 Size: 27,955 Coding Exon Count: 4 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:132,332,678-132,362,240)mRNA (may differ from genome)Protein (170 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
PubMedStanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.54 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 247.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -395.721597-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF13917 - Zinc knuckle

ModBase Predicted Comparative 3D Structure on Q8TBK6-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsemblFlyBase  
 Protein SequenceProtein SequenceProtein Sequence  
 AlignmentAlignmentAlignment  

-  Descriptions from all associated GenBank mRNAs
  AK000101 - Homo sapiens cDNA FLJ20094 fis, clone COL04320.
JD312942 - Sequence 293966 from Patent EP1572962.
AK122970 - Homo sapiens cDNA FLJ16714 fis, clone UTERU2035231, highly similar to Zinc finger CCHC domain-containing protein 10.
JD428020 - Sequence 409044 from Patent EP1572962.
JD502232 - Sequence 483256 from Patent EP1572962.
JD454870 - Sequence 435894 from Patent EP1572962.
JD566140 - Sequence 547164 from Patent EP1572962.
BC022443 - Homo sapiens zinc finger, CCHC domain containing 10, mRNA (cDNA clone MGC:24789 IMAGE:4285562), complete cds.
BC005211 - Homo sapiens zinc finger, CCHC domain containing 10, mRNA (cDNA clone MGC:12225 IMAGE:3961163), complete cds.
JD561102 - Sequence 542126 from Patent EP1572962.
AK300543 - Homo sapiens cDNA FLJ57436 complete cds, highly similar to Homo sapiens zinc finger, CCHC domain containing 10 (ZCCHC10), mRNA.
JD438518 - Sequence 419542 from Patent EP1572962.
CU675047 - Synthetic construct Homo sapiens gateway clone IMAGE:100020766 5' read ZCCHC10 mRNA.
HQ447753 - Synthetic construct Homo sapiens clone IMAGE:100071084; CCSB012844_01 zinc finger, CCHC domain containing 10 (ZCCHC10) gene, encodes complete protein.
KJ899019 - Synthetic construct Homo sapiens clone ccsbBroadEn_08413 ZCCHC10 gene, encodes complete protein.
KJ902695 - Synthetic construct Homo sapiens clone ccsbBroadEn_12089 ZCCHC10 gene, encodes complete protein.
AF086446 - Homo sapiens full length insert cDNA clone ZD81F06.
CU692618 - Synthetic construct Homo sapiens gateway clone IMAGE:100022045 5' read ZCCHC10 mRNA.
BC015986 - Homo sapiens zinc finger, CCHC domain containing 10, mRNA (cDNA clone IMAGE:4094566), partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_017665, NP_060135, Q8TBK6-2
UCSC ID: uc003kyg.3
RefSeq Accession: NM_017665
Protein: Q8TBK6-2, splice isoform of Q8TBK6 CCDS: CCDS4165.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_017665.1
exon count: 4CDS single in 3' UTR: no RNA size: 2136
ORF size: 513CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 1226.00frame shift in genome: no % Coverage: 99.30
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.