Human Gene CCDC102A (uc002elw.3) Description and Page Index
  Description: Homo sapiens coiled-coil domain containing 102A (CCDC102A), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:57,546,090-57,570,477 Size: 24,388 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr16:57,546,653-57,563,089 Size: 16,437 Coding Exon Count: 8 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:57,546,090-57,570,477)mRNA (may differ from genome)Protein (550 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtPubMedStanford SOURCETreefamUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.57 RPKM in Artery - Aorta
Total median expression: 225.04 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -112.00213-0.526 Picture PostScript Text
3' UTR -214.60563-0.381 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF01576 - Myosin tail

ModBase Predicted Comparative 3D Structure on Q96A19
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details  Gene Details  
Gene Sorter  Gene Sorter  
  EnsemblFlyBase  
  Protein SequenceProtein Sequence  
  AlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003774 motor activity

Cellular Component:
GO:0016459 myosin complex


-  Descriptions from all associated GenBank mRNAs
  BC009941 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone MGC:13119 IMAGE:4100726), complete cds.
LF208239 - JP 2014500723-A/15742: Polycomb-Associated Non-Coding RNAs.
BC004307 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone IMAGE:3626861), partial cds.
BC008285 - Homo sapiens coiled-coil domain containing 102A, mRNA (cDNA clone MGC:10992 IMAGE:3637387), complete cds.
JD425983 - Sequence 407007 from Patent EP1572962.
JD393388 - Sequence 374412 from Patent EP1572962.
JD483478 - Sequence 464502 from Patent EP1572962.
JD453387 - Sequence 434411 from Patent EP1572962.
JD382788 - Sequence 363812 from Patent EP1572962.
JD371430 - Sequence 352454 from Patent EP1572962.
JD097536 - Sequence 78560 from Patent EP1572962.
JD450812 - Sequence 431836 from Patent EP1572962.
JD134880 - Sequence 115904 from Patent EP1572962.
JD267888 - Sequence 248912 from Patent EP1572962.
JD503573 - Sequence 484597 from Patent EP1572962.
DQ892649 - Synthetic construct clone IMAGE:100005279; FLH188630.01X; RZPDo839E0573D coiled-coil domain containing 102A (CCDC102A) gene, encodes complete protein.
DQ895888 - Synthetic construct Homo sapiens clone IMAGE:100010348; FLH188626.01L; RZPDo839E0563D coiled-coil domain containing 102A (CCDC102A) gene, encodes complete protein.
LF373747 - JP 2014500723-A/181250: Polycomb-Associated Non-Coding RNAs.
LF373751 - JP 2014500723-A/181254: Polycomb-Associated Non-Coding RNAs.
LF373753 - JP 2014500723-A/181256: Polycomb-Associated Non-Coding RNAs.
LF373754 - JP 2014500723-A/181257: Polycomb-Associated Non-Coding RNAs.
LF373755 - JP 2014500723-A/181258: Polycomb-Associated Non-Coding RNAs.
JD128367 - Sequence 109391 from Patent EP1572962.
JD458201 - Sequence 439225 from Patent EP1572962.
JD129062 - Sequence 110086 from Patent EP1572962.
JD211597 - Sequence 192621 from Patent EP1572962.
JD192148 - Sequence 173172 from Patent EP1572962.
MA443816 - JP 2018138019-A/15742: Polycomb-Associated Non-Coding RNAs.
MA609324 - JP 2018138019-A/181250: Polycomb-Associated Non-Coding RNAs.
MA609328 - JP 2018138019-A/181254: Polycomb-Associated Non-Coding RNAs.
MA609330 - JP 2018138019-A/181256: Polycomb-Associated Non-Coding RNAs.
MA609331 - JP 2018138019-A/181257: Polycomb-Associated Non-Coding RNAs.
MA609332 - JP 2018138019-A/181258: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: C102A_HUMAN, NM_033212, NP_149989, Q96A19, Q9BT74
UCSC ID: uc002elw.3
RefSeq Accession: NM_033212
Protein: Q96A19 (aka C102A_HUMAN)
CCDS: CCDS10784.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_033212.3
exon count: 9CDS single in 3' UTR: no RNA size: 2450
ORF size: 1653CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3458.00frame shift in genome: no % Coverage: 99.14
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.