Human Gene AK300656 (uc004amx.3) Description and Page Index
  Description: SubName: Full=cDNA FLJ56771, highly similar to Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), mRNA;
Transcript (Including UTRs)
   Position: hg19 chr9:86,323,236-86,328,293 Size: 5,058 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr9:86,327,416-86,327,910 Size: 495 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr9:86,323,236-86,328,293)mRNA (may differ from genome)Protein (164 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaCGAPEnsembl
ExonPrimerGeneCardsMGIPubMedStanford SOURCEUniProtKB

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.75 RPKM in Testis
Total median expression: 96.15 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -45.70136-0.336 Picture PostScript Text
3' UTR -98.90383-0.258 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002492 - Transposase_Tc1-like

ModBase Predicted Comparative 3D Structure on B7Z6N6
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AX721189 - Sequence 149 from Patent WO0220754.
AK300656 - Homo sapiens cDNA FLJ56771 complete cds, highly similar to Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), mRNA.
DQ577559 - Homo sapiens piRNA piR-45671, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z6N6, B7Z6N6_HUMAN
UCSC ID: uc004amx.3
Representative RNA: AK300656
Protein: B7Z6N6

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: AK300656.1
exon count: 2CDS single in 3' UTR: no RNA size: 996
ORF size: 495CDS single in intron: no Alignment % ID: 99.80
txCdsPredict score: 825.50frame shift in genome: no % Coverage: 99.90
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.