Human Gene LOC284889 (uc002zys.2) Description and Page Index
  Description: Homo sapiens uncharacterized LOC284889 (LOC284889), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr22:24,235,897-24,241,117 Size: 5,221 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr22:24,237,235-24,238,100 Size: 866 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsGenetic AssociationsGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:24,235,897-24,241,117)mRNA (may differ from genome)Protein (189 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsLynxMGI
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: B5MCZ7_HUMAN
DESCRIPTION: SubName: Full=Uncharacterized protein;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): LOC284889
CDC HuGE Published Literature: LOC284889

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.67 RPKM in Testis
Total median expression: 46.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -96.40284-0.339 Picture PostScript Text
3' UTR -641.271338-0.479 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on B5MCZ7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK304122 - Homo sapiens cDNA FLJ59607 complete cds, moderately similar to D-dopachrome decarboxylase (EC 4.1.1.84).
AK315943 - Homo sapiens cDNA, FLJ78842 complete cds, moderately similar to D-dopachrome decarboxylase (EC 4.1.1.84).
DQ588947 - Homo sapiens piRNA piR-56059, complete sequence.
DQ570501 - Homo sapiens piRNA piR-30613, complete sequence.
DQ576561 - Homo sapiens piRNA piR-44673, complete sequence.
DQ587911 - Homo sapiens piRNA piR-55023, complete sequence.
DQ580697 - Homo sapiens piRNA piR-48809, complete sequence.
BC036909 - Homo sapiens, clone IMAGE:5164782, mRNA.
LF205369 - JP 2014500723-A/12872: Polycomb-Associated Non-Coding RNAs.
LF208372 - JP 2014500723-A/15875: Polycomb-Associated Non-Coding RNAs.
LF319748 - JP 2014500723-A/127251: Polycomb-Associated Non-Coding RNAs.
DQ600390 - Homo sapiens piRNA piR-38456, complete sequence.
DQ600389 - Homo sapiens piRNA piR-38455, complete sequence.
DQ590506 - Homo sapiens piRNA piR-57618, complete sequence.
DQ595552 - Homo sapiens piRNA piR-61664, complete sequence.
DQ595553 - Homo sapiens piRNA piR-61665, complete sequence.
DQ590507 - Homo sapiens piRNA piR-57619, complete sequence.
JD409896 - Sequence 390920 from Patent EP1572962.
LF319747 - JP 2014500723-A/127250: Polycomb-Associated Non-Coding RNAs.
LF375582 - JP 2014500723-A/183085: Polycomb-Associated Non-Coding RNAs.
DQ570411 - Homo sapiens piRNA piR-30523, complete sequence.
DQ576915 - Homo sapiens piRNA piR-45027, complete sequence.
JD024459 - Sequence 5483 from Patent EP1572962.
JD028942 - Sequence 9966 from Patent EP1572962.
DQ584817 - Homo sapiens piRNA piR-51929, complete sequence.
LF375581 - JP 2014500723-A/183084: Polycomb-Associated Non-Coding RNAs.
DQ577081 - Homo sapiens piRNA piR-45193, complete sequence.
DQ599529 - Homo sapiens piRNA piR-37595, complete sequence.
DQ591152 - Homo sapiens piRNA piR-58264, complete sequence.
DQ592628 - Homo sapiens piRNA piR-59740, complete sequence.
DQ600403 - Homo sapiens piRNA piR-38469, complete sequence.
DQ577082 - Homo sapiens piRNA piR-45194, complete sequence.
DQ583671 - Homo sapiens piRNA piR-50783, complete sequence.
DQ601720 - Homo sapiens piRNA piR-39786, complete sequence.
DQ570399 - Homo sapiens piRNA piR-30511, complete sequence.
JD230122 - Sequence 211146 from Patent EP1572962.
DQ584313 - Homo sapiens piRNA piR-51425, complete sequence.
DQ574989 - Homo sapiens piRNA piR-43101, complete sequence.
DQ574988 - Homo sapiens piRNA piR-43100, complete sequence.
JD512887 - Sequence 493911 from Patent EP1572962.
JD346190 - Sequence 327214 from Patent EP1572962.
JD330607 - Sequence 311631 from Patent EP1572962.
DQ580309 - Homo sapiens piRNA piR-48421, complete sequence.
DQ580310 - Homo sapiens piRNA piR-48422, complete sequence.
DQ596521 - Homo sapiens piRNA piR-34587, complete sequence.
DQ578308 - Homo sapiens piRNA piR-46420, complete sequence.
JD124277 - Sequence 105301 from Patent EP1572962.
JD225221 - Sequence 206245 from Patent EP1572962.
MA440946 - JP 2018138019-A/12872: Polycomb-Associated Non-Coding RNAs.
MA443949 - JP 2018138019-A/15875: Polycomb-Associated Non-Coding RNAs.
MA555325 - JP 2018138019-A/127251: Polycomb-Associated Non-Coding RNAs.
MA555324 - JP 2018138019-A/127250: Polycomb-Associated Non-Coding RNAs.
MA611159 - JP 2018138019-A/183085: Polycomb-Associated Non-Coding RNAs.
MA611158 - JP 2018138019-A/183084: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B5MCZ7, B5MCZ7_HUMAN, NR_038911, uc011ajf.2
UCSC ID: uc002zys.2
RefSeq Accession: NR_038911
Protein: B5MCZ7

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_038911.1
exon count: 3CDS single in 3' UTR: no RNA size: 2192
ORF size: 570CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 653.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.