Human Gene LOC100129924 (uc021omg.1) Description and Page Index
  Description: Homo sapiens uncharacterized LOC100129924 (LOC100129924), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr1:43,253,661-43,263,901 Size: 10,241 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr1:43,255,104-43,263,896 Size: 8,793 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:43,253,661-43,263,901)mRNA (may differ from genome)Protein (245 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsLynxMGI
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: H7C135_HUMAN
DESCRIPTION: SubName: Full=Uncharacterized protein C1orf50; Flags: Fragment;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.13 RPKM in Testis
Total median expression: 147.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -85.19240-0.355 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on H7C135
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Descriptions from all associated GenBank mRNAs
  AK299874 - Homo sapiens cDNA FLJ52234 complete cds.
AK095635 - Homo sapiens cDNA FLJ38316 fis, clone FCBBF3023599.

-  Other Names for This Gene
  Alternate Gene Symbols: C1orf50, H7C135, H7C135_HUMAN, NM_001242750, NP_001229679
UCSC ID: uc021omg.1
RefSeq Accession: NM_001242750
Protein: H7C135

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001242750.1
exon count: 7CDS single in 3' UTR: no RNA size: 983
ORF size: 738CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1531.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.