Human Gene LOC100505624 (uc002rjy.3) Description and Page Index
  Description: Homo sapiens uncharacterized LOC100505624 (LOC100505624), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr2:27,558,409-27,560,670 Size: 2,262 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr2:27,559,315-27,560,449 Size: 1,135 Coding Exon Count: 3 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:27,558,409-27,560,670)mRNA (may differ from genome)Protein (94 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVLynx
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.27 RPKM in Testis
Total median expression: 149.04 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -134.40335-0.401 Picture PostScript Text
3' UTR -60.25221-0.273 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  CU674089 - Synthetic construct Homo sapiens gateway clone IMAGE:100017719 3' read GTF3C2 mRNA.
AK098715 - Homo sapiens cDNA FLJ25849 fis, clone TST08968.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_038427, uc002rjy.2
UCSC ID: uc002rjy.3
RefSeq Accession: NR_038427

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_038427.1
exon count: 4CDS single in 3' UTR: no RNA size: 841
ORF size: 285CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 727.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.