Human Gene LOC729737 (uc021oeg.2) Description and Page Index
  Description: Homo sapiens uncharacterized LOC729737 (LOC729737), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:134,773-140,566 Size: 5,794 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr1:138,530-139,792 Size: 1,263 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:134,773-140,566)mRNA (may differ from genome)Protein (389 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsLynxMGI
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: C9J4L2_HUMAN
DESCRIPTION: SubName: Full=Uncharacterized protein;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.37 RPKM in Whole Blood
Total median expression: 52.89 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -194.10547-0.355 Picture PostScript Text
3' UTR -1804.093757-0.480 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15788 - Domain of unknown function (DUF4705)

ModBase Predicted Comparative 3D Structure on C9J4L2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK097080 - Homo sapiens cDNA FLJ39761 fis, clone SPLEN1000083.
JD402400 - Sequence 383424 from Patent EP1572962.
JD393832 - Sequence 374856 from Patent EP1572962.
JD337898 - Sequence 318922 from Patent EP1572962.
JD151036 - Sequence 132060 from Patent EP1572962.
JD493144 - Sequence 474168 from Patent EP1572962.
JD493143 - Sequence 474167 from Patent EP1572962.
JD526146 - Sequence 507170 from Patent EP1572962.
JD526147 - Sequence 507171 from Patent EP1572962.
JD317624 - Sequence 298648 from Patent EP1572962.
JD459811 - Sequence 440835 from Patent EP1572962.
JD422540 - Sequence 403564 from Patent EP1572962.
JD075754 - Sequence 56778 from Patent EP1572962.
JD407181 - Sequence 388205 from Patent EP1572962.
JD292746 - Sequence 273770 from Patent EP1572962.
JD167365 - Sequence 148389 from Patent EP1572962.
JD389975 - Sequence 370999 from Patent EP1572962.
JD252484 - Sequence 233508 from Patent EP1572962.
JD497447 - Sequence 478471 from Patent EP1572962.
JD462574 - Sequence 443598 from Patent EP1572962.
JD250139 - Sequence 231163 from Patent EP1572962.
JD395654 - Sequence 376678 from Patent EP1572962.
JD118881 - Sequence 99905 from Patent EP1572962.
JD107109 - Sequence 88133 from Patent EP1572962.
DQ574721 - Homo sapiens piRNA piR-42833, complete sequence.
JD132768 - Sequence 113792 from Patent EP1572962.
JD064844 - Sequence 45868 from Patent EP1572962.
JD362617 - Sequence 343641 from Patent EP1572962.
JD456513 - Sequence 437537 from Patent EP1572962.
JD456514 - Sequence 437538 from Patent EP1572962.
JD383983 - Sequence 365007 from Patent EP1572962.
JD149672 - Sequence 130696 from Patent EP1572962.
JD409667 - Sequence 390691 from Patent EP1572962.
JD409668 - Sequence 390692 from Patent EP1572962.
JD100884 - Sequence 81908 from Patent EP1572962.
JD140077 - Sequence 121101 from Patent EP1572962.
JD100883 - Sequence 81907 from Patent EP1572962.
JD147592 - Sequence 128616 from Patent EP1572962.
JD210002 - Sequence 191026 from Patent EP1572962.
JD554961 - Sequence 535985 from Patent EP1572962.
DQ589850 - Homo sapiens piRNA piR-56962, complete sequence.
JD135384 - Sequence 116408 from Patent EP1572962.
JD058230 - Sequence 39254 from Patent EP1572962.
JD167495 - Sequence 148519 from Patent EP1572962.
DQ575011 - Homo sapiens piRNA piR-43123, complete sequence.
DQ575010 - Homo sapiens piRNA piR-43122, complete sequence.
DQ575009 - Homo sapiens piRNA piR-43121, complete sequence.
JD398278 - Sequence 379302 from Patent EP1572962.
JD525721 - Sequence 506745 from Patent EP1572962.
JD105113 - Sequence 86137 from Patent EP1572962.
JD442677 - Sequence 423701 from Patent EP1572962.
JD075478 - Sequence 56502 from Patent EP1572962.
JD471666 - Sequence 452690 from Patent EP1572962.
JD481125 - Sequence 462149 from Patent EP1572962.
JD425470 - Sequence 406494 from Patent EP1572962.
JD168782 - Sequence 149806 from Patent EP1572962.
JD168783 - Sequence 149807 from Patent EP1572962.
JD373121 - Sequence 354145 from Patent EP1572962.
JD205899 - Sequence 186923 from Patent EP1572962.
JD562401 - Sequence 543425 from Patent EP1572962.
JD421056 - Sequence 402080 from Patent EP1572962.
JD466057 - Sequence 447081 from Patent EP1572962.
JD421055 - Sequence 402079 from Patent EP1572962.
DQ578983 - Homo sapiens piRNA piR-47095, complete sequence.
JD343471 - Sequence 324495 from Patent EP1572962.
JD368021 - Sequence 349045 from Patent EP1572962.
JD346293 - Sequence 327317 from Patent EP1572962.
JD104899 - Sequence 85923 from Patent EP1572962.
JD149222 - Sequence 130246 from Patent EP1572962.
JD425042 - Sequence 406066 from Patent EP1572962.
JD165493 - Sequence 146517 from Patent EP1572962.
JD408642 - Sequence 389666 from Patent EP1572962.
JD487150 - Sequence 468174 from Patent EP1572962.
JD487150 - Sequence 468174 from Patent EP1572962.
AK311604 - Homo sapiens cDNA, FLJ18646.
JD487150 - Sequence 468174 from Patent EP1572962.
JD487150 - Sequence 468174 from Patent EP1572962.
JD175341 - Sequence 156365 from Patent EP1572962.
JD487150 - Sequence 468174 from Patent EP1572962.
AK311126 - Homo sapiens cDNA, FLJ18168.
DQ575563 - Homo sapiens piRNA piR-43675, complete sequence.
JD156354 - Sequence 137378 from Patent EP1572962.
JD260723 - Sequence 241747 from Patent EP1572962.
JD445700 - Sequence 426724 from Patent EP1572962.
JD149173 - Sequence 130197 from Patent EP1572962.
JD289992 - Sequence 271016 from Patent EP1572962.
JD338427 - Sequence 319451 from Patent EP1572962.
JD416425 - Sequence 397449 from Patent EP1572962.
JD257168 - Sequence 238192 from Patent EP1572962.
JD476949 - Sequence 457973 from Patent EP1572962.
JD376631 - Sequence 357655 from Patent EP1572962.
DQ574645 - Homo sapiens piRNA piR-42757, complete sequence.
DQ575955 - Homo sapiens piRNA piR-44067, complete sequence.
DQ573170 - Homo sapiens piRNA piR-41282, complete sequence.
JD492670 - Sequence 473694 from Patent EP1572962.
JD210075 - Sequence 191099 from Patent EP1572962.
JD255601 - Sequence 236625 from Patent EP1572962.
AK302573 - Homo sapiens cDNA FLJ52612 complete cds.
DQ577349 - Homo sapiens piRNA piR-45461, complete sequence.
DQ584983 - Homo sapiens piRNA piR-52095, complete sequence.
JD422693 - Sequence 403717 from Patent EP1572962.
DQ584982 - Homo sapiens piRNA piR-52094, complete sequence.
DQ576410 - Homo sapiens piRNA piR-44522, complete sequence.
JD395796 - Sequence 376820 from Patent EP1572962.
JD329325 - Sequence 310349 from Patent EP1572962.
JD149087 - Sequence 130111 from Patent EP1572962.
JD070713 - Sequence 51737 from Patent EP1572962.
JD418511 - Sequence 399535 from Patent EP1572962.
AK294489 - Homo sapiens cDNA FLJ52615 complete cds.
JD075649 - Sequence 56673 from Patent EP1572962.
JD459811 - Sequence 440835 from Patent EP1572962.
JD422540 - Sequence 403564 from Patent EP1572962.
JD534315 - Sequence 515339 from Patent EP1572962.
JD193752 - Sequence 174776 from Patent EP1572962.
JD209990 - Sequence 191014 from Patent EP1572962.
JD193751 - Sequence 174775 from Patent EP1572962.
JD104336 - Sequence 85360 from Patent EP1572962.
JD456945 - Sequence 437969 from Patent EP1572962.
JD395654 - Sequence 376678 from Patent EP1572962.
JD118881 - Sequence 99905 from Patent EP1572962.
JD107109 - Sequence 88133 from Patent EP1572962.
JD368263 - Sequence 349287 from Patent EP1572962.
DQ590432 - Homo sapiens piRNA piR-57544, complete sequence.
DQ574507 - Homo sapiens piRNA piR-42619, complete sequence.
DQ574506 - Homo sapiens piRNA piR-42618, complete sequence.
DQ582646 - Homo sapiens piRNA piR-32758, complete sequence.
JD422543 - Sequence 403567 from Patent EP1572962.
JD528616 - Sequence 509640 from Patent EP1572962.
JD203988 - Sequence 185012 from Patent EP1572962.
JD145312 - Sequence 126336 from Patent EP1572962.
DQ578146 - Homo sapiens piRNA piR-46258, complete sequence.
DQ584610 - Homo sapiens piRNA piR-51722, complete sequence.
DQ584609 - Homo sapiens piRNA piR-51721, complete sequence.
JD114170 - Sequence 95194 from Patent EP1572962.
JD370486 - Sequence 351510 from Patent EP1572962.
JD107007 - Sequence 88031 from Patent EP1572962.
JD453018 - Sequence 434042 from Patent EP1572962.
JD156355 - Sequence 137379 from Patent EP1572962.
JD260725 - Sequence 241749 from Patent EP1572962.
JD105216 - Sequence 86240 from Patent EP1572962.
JD317553 - Sequence 298577 from Patent EP1572962.
JD105217 - Sequence 86241 from Patent EP1572962.
JD317554 - Sequence 298578 from Patent EP1572962.
DQ586255 - Homo sapiens piRNA piR-53367, complete sequence.
DQ580039 - Homo sapiens piRNA piR-48151, complete sequence.
JD180704 - Sequence 161728 from Patent EP1572962.
JD219716 - Sequence 200740 from Patent EP1572962.
DQ589481 - Homo sapiens piRNA piR-56593, complete sequence.
JD107100 - Sequence 88124 from Patent EP1572962.
JD411284 - Sequence 392308 from Patent EP1572962.
JD258244 - Sequence 239268 from Patent EP1572962.
JD336976 - Sequence 318000 from Patent EP1572962.
DQ598407 - Homo sapiens piRNA piR-36473, complete sequence.
JD387792 - Sequence 368816 from Patent EP1572962.
JD387791 - Sequence 368815 from Patent EP1572962.
JD456373 - Sequence 437397 from Patent EP1572962.
DQ572788 - Homo sapiens piRNA piR-40900, complete sequence.
DQ577524 - Homo sapiens piRNA piR-45636, complete sequence.
JD536538 - Sequence 517562 from Patent EP1572962.
JD536537 - Sequence 517561 from Patent EP1572962.
JD370485 - Sequence 351509 from Patent EP1572962.
DQ595736 - Homo sapiens piRNA piR-61848, complete sequence.
JD320934 - Sequence 301958 from Patent EP1572962.
DQ575018 - Homo sapiens piRNA piR-43130, complete sequence.
JD333704 - Sequence 314728 from Patent EP1572962.
JD068184 - Sequence 49208 from Patent EP1572962.
JD459810 - Sequence 440834 from Patent EP1572962.
DQ572955 - Homo sapiens piRNA piR-41067, complete sequence.
JD079421 - Sequence 60445 from Patent EP1572962.
JD375182 - Sequence 356206 from Patent EP1572962.
JD258247 - Sequence 239271 from Patent EP1572962.
JD387613 - Sequence 368637 from Patent EP1572962.
JD295056 - Sequence 276080 from Patent EP1572962.
JD087192 - Sequence 68216 from Patent EP1572962.
JD075630 - Sequence 56654 from Patent EP1572962.
JD518467 - Sequence 499491 from Patent EP1572962.
JD275121 - Sequence 256145 from Patent EP1572962.
JD292708 - Sequence 273732 from Patent EP1572962.
JD210003 - Sequence 191027 from Patent EP1572962.
DQ573067 - Homo sapiens piRNA piR-41179, complete sequence.
JD338139 - Sequence 319163 from Patent EP1572962.
JD422600 - Sequence 403624 from Patent EP1572962.
JD262631 - Sequence 243655 from Patent EP1572962.
JD363412 - Sequence 344436 from Patent EP1572962.
DQ599768 - Homo sapiens piRNA piR-37834, complete sequence.
DQ574835 - Homo sapiens piRNA piR-42947, complete sequence.
DQ574318 - Homo sapiens piRNA piR-42430, complete sequence.
JD049302 - Sequence 30326 from Patent EP1572962.
JD459796 - Sequence 440820 from Patent EP1572962.
DQ584937 - Homo sapiens piRNA piR-52049, complete sequence.
DQ600587 - Homo sapiens piRNA piR-38653, complete sequence.
JD422535 - Sequence 403559 from Patent EP1572962.
JD460292 - Sequence 441316 from Patent EP1572962.
JD075651 - Sequence 56675 from Patent EP1572962.
JD456771 - Sequence 437795 from Patent EP1572962.
JD209903 - Sequence 190927 from Patent EP1572962.
JD118873 - Sequence 99897 from Patent EP1572962.
JD118872 - Sequence 99896 from Patent EP1572962.
DQ574670 - Homo sapiens piRNA piR-42782, complete sequence.
DQ595057 - Homo sapiens piRNA piR-61169, complete sequence.
JD205820 - Sequence 186844 from Patent EP1572962.
JD540592 - Sequence 521616 from Patent EP1572962.
JD548933 - Sequence 529957 from Patent EP1572962.
JD518691 - Sequence 499715 from Patent EP1572962.
DQ598813 - Homo sapiens piRNA piR-36879, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: C9J4L2, C9J4L2_HUMAN, NR_039983, uc021oeg.1
UCSC ID: uc021oeg.2
RefSeq Accession: NR_039983
Protein: C9J4L2

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_039983.2
exon count: 3CDS single in 3' UTR: no RNA size: 5474
ORF size: 1170CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1200.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.