Human Gene SLC35E3 (uc001suh.3)
Description: Homo sapiens solute carrier family 35, member E3 (SLC35E3), mRNA.
Transcript (Including UTRs)
Position: hg19 chr12:69,139,936-69,159,853 Size: 19,918 Total Exon Count: 5 Strand: +
Coding Region
Position: hg19 chr12:69,140,158-69,158,670 Size: 18,513 Coding Exon Count: 5
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: S35E3_HUMAN
DESCRIPTION: RecName: Full=Solute carrier family 35 member E3; AltName: Full=Bladder cancer-overexpressed gene 1 protein;
FUNCTION: Putative transporter (By similarity).SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Potential).SIMILARITY: Belongs to the TPT transporter family. SLC35E subfamily.SEQUENCE CAUTION: Sequence=AAF73127.1; Type=Frameshift; Positions=4, 16, 40;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR004853 - DUF250
Pfam Domains: PF03151 - Triose-phosphate Transporter family
SCOP Domains: 103481 - Multidrug resistance efflux transporter EmrE
ModBase Predicted Comparative 3D Structure on Q7Z769
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK289645 - Homo sapiens cDNA FLJ75128 complete cds, highly similar to Homo sapiens solute carrier family 35, member E3, mRNA.AY358943 - Homo sapiens clone DNA125170 BLOV1 (UNQ3043) mRNA, complete cds.LF208896 - JP 2014500723-A/16399: Polycomb-Associated Non-Coding RNAs.AF148713 - Homo sapiens bladder cancer overexpressed protein (BLOV1) mRNA, complete cds.JD217642 - Sequence 198666 from Patent EP1572962.BC030504 - Homo sapiens solute carrier family 35, member E3, mRNA (cDNA clone MGC:40294 IMAGE:3900045), complete cds.BC049192 - Homo sapiens solute carrier family 35, member E3, mRNA (cDNA clone MGC:51858 IMAGE:3922727), complete cds.BC021103 - Homo sapiens solute carrier family 35, member E3, mRNA (cDNA clone MGC:31845 IMAGE:4810919), complete cds.BC008412 - Homo sapiens solute carrier family 35, member E3, mRNA (cDNA clone MGC:14550 IMAGE:4280446), complete cds.JD501293 - Sequence 482317 from Patent EP1572962.JD527879 - Sequence 508903 from Patent EP1572962.CU688882 - Synthetic construct Homo sapiens gateway clone IMAGE:100021141 5' read SLC35E3 mRNA.HQ448512 - Synthetic construct Homo sapiens clone IMAGE:100071946; CCSB011130_01 solute carrier family 35, member E3 (SLC35E3) gene, encodes complete protein.KJ894204 - Synthetic construct Homo sapiens clone ccsbBroadEn_03598 SLC35E3 gene, encodes complete protein.DQ575355 - Homo sapiens piRNA piR-43467, complete sequence.LF323866 - JP 2014500723-A/131369: Polycomb-Associated Non-Coding RNAs.LF323861 - JP 2014500723-A/131364: Polycomb-Associated Non-Coding RNAs.JD481240 - Sequence 462264 from Patent EP1572962.JD179344 - Sequence 160368 from Patent EP1572962.JD161784 - Sequence 142808 from Patent EP1572962.JD547871 - Sequence 528895 from Patent EP1572962.JD169737 - Sequence 150761 from Patent EP1572962.JD125733 - Sequence 106757 from Patent EP1572962.JD125734 - Sequence 106758 from Patent EP1572962.JD395474 - Sequence 376498 from Patent EP1572962.JD138315 - Sequence 119339 from Patent EP1572962.JD175939 - Sequence 156963 from Patent EP1572962.JD530978 - Sequence 512002 from Patent EP1572962.JD047719 - Sequence 28743 from Patent EP1572962.JD204826 - Sequence 185850 from Patent EP1572962.JD177492 - Sequence 158516 from Patent EP1572962.JD177493 - Sequence 158517 from Patent EP1572962.JD334177 - Sequence 315201 from Patent EP1572962.JD096447 - Sequence 77471 from Patent EP1572962.JD096446 - Sequence 77470 from Patent EP1572962.JD517649 - Sequence 498673 from Patent EP1572962.JD283609 - Sequence 264633 from Patent EP1572962.JD280951 - Sequence 261975 from Patent EP1572962.JD207410 - Sequence 188434 from Patent EP1572962.JD226028 - Sequence 207052 from Patent EP1572962.JD280469 - Sequence 261493 from Patent EP1572962.MA559443 - JP 2018138019-A/131369: Polycomb-Associated Non-Coding RNAs.MA559438 - JP 2018138019-A/131364: Polycomb-Associated Non-Coding RNAs.MA444473 - JP 2018138019-A/16399: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: A8K0T0, BLOV1, NM_018656, NP_061126, Q0P5Y5, Q7Z769, Q9P0V1, S35E3_HUMAN, UNQ3043/PRO9859UCSC ID: uc001suh.3RefSeq Accession: NM_018656
Protein: Q7Z769
(aka S35E3_HUMAN)
CCDS: CCDS41808.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_018656.2
exon count:
5 CDS single in 3' UTR:
no
RNA size:
2347
ORF size:
942 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2022.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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