Human Gene CEP55 (uc009xug.3)
  Description: Homo sapiens centrosomal protein 55kDa (CEP55), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr10:95,256,369-95,288,849 Size: 32,481 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr10:95,259,809-95,287,910 Size: 28,102 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:95,256,369-95,288,849)mRNA (may differ from genome)Protein (464 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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OMIMPubMedTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CEP55_HUMAN
DESCRIPTION: RecName: Full=Centrosomal protein of 55 kDa; Short=Cep55; AltName: Full=Up-regulated in colon cancer 6;
FUNCTION: Plays a role in mitotic exit and cytokinesis. Not required for microtubule nucleation. Recruits PDCD6IP and TSG101 to midbody during cytokinesis.
SUBUNIT: Homodimer. Interacts (phosphorylated on Ser-425 and Ser- 428) with PLK1. Interacts with AKAP9; the interaction occurs in interphase and is lost upon mitotic entry. Interacts with PCNT; the interaction occurs in interphase and is lost upon mitotic entry. Interacts with PDCD6IP; the interaction is direct; CEP55 binds PDCD6IP in a 2:1 stoechiometry; PDCD6IP competes with TSG101 for the same binding site. Interacts with TSG101; TSG101 competes with PDCD6IP for the same binding site; interaction is required for cytokinesis but not for viral budding. Interacts with FAM125A, VPS37B, VPS37C and VPS28.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome, centriole. Cytoplasm, cytoskeleton, centrosome. Cleavage furrow. Midbody. Note=Present at the centrosomes at interphase. A small portion is associated preferentially with the mother centriole, whereas the majority localizes to the pericentriolar material. During mitosis, loss of affinity for the centrosome at the onset of prophase and diffusion throughout the cell. This dissociation from the centrosome is phosphorylation-dependent. May remain localized at the centrosome during mitosis in certain cell types. Appears at the cleavage furrow in late anaphase and in the midbody in cytokinesis.
TISSUE SPECIFICITY: Widely expressed, mostly in proliferative tissues. Highly expressed in testis. Intermediate levels in adult and fetal thymus, as well as in various cancer cell lines. Low levels in different parts of the digestive tract, bone marrow, lymph nodes, placenta, fetal heart and fetal spleen. Hardly detected in brain.
PTM: There is a hierachy of phosphorylation, where both Ser-425 and Ser-428 are phosphorylated at the onset of mitosis, prior to Ser-436. Phosphorylation at Ser-425 and Ser-428 is required for dissociation from the centrosome at the G2/M boundary. Phosphorylation at the 3 sites, Ser-425, Ser-428 and Ser-436, is required for protein function at the final stages of cell division to complete cytokinesis successfully.
SEQUENCE CAUTION: Sequence=BAA91670.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): CEP55
CDC HuGE Published Literature: CEP55

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.63 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 48.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -90.00182-0.495 Picture PostScript Text
3' UTR -216.57939-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022008 - EABR

Pfam Domains:
PF12180 - TSG101 and ALIX binding domain of CEP55

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3E1R - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q53EZ4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0000281 mitotic cytokinesis
GO:0000920 cell separation after cytokinesis
GO:0007049 cell cycle
GO:0007275 multicellular organism development
GO:0014066 regulation of phosphatidylinositol 3-kinase signaling
GO:0045184 establishment of protein localization
GO:0051301 cell division
GO:0072001 renal system development
GO:1904888 cranial skeletal system development
GO:0006997 nucleus organization
GO:0007080 mitotic metaphase plate congression

Cellular Component:
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0005815 microtubule organizing center
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0030496 midbody
GO:0032154 cleavage furrow
GO:0045171 intercellular bridge
GO:0090543 Flemming body


-  Descriptions from all associated GenBank mRNAs
  HQ447335 - Synthetic construct Homo sapiens clone IMAGE:100070652; CCSB004717_02 centrosomal protein 55kDa (CEP55) gene, encodes complete protein.
KJ899087 - Synthetic construct Homo sapiens clone ccsbBroadEn_08481 CEP55 gene, encodes complete protein.
AY788918 - Homo sapiens centrosomal protein 55 kDa mRNA, complete cds.
AK315536 - Homo sapiens cDNA, FLJ96602.
BX640718 - Homo sapiens mRNA; cDNA DKFZp686P16192 (from clone DKFZp686P16192).
AK223495 - Homo sapiens mRNA for chromosome 10 open reading frame 3 variant, clone: FCC120C11.
AB091343 - Homo sapiens URCC6 mRNA for up-regulated in colon cancer 6, complete cds.
BC008947 - Homo sapiens centrosomal protein 55kDa, mRNA (cDNA clone MGC:3422 IMAGE:3028566), complete cds.
CU679193 - Synthetic construct Homo sapiens gateway clone IMAGE:100019521 5' read CEP55 mRNA.
AK001402 - Homo sapiens cDNA FLJ10540 fis, clone NT2RP2001245.
JD245442 - Sequence 226466 from Patent EP1572962.
JD258356 - Sequence 239380 from Patent EP1572962.
JD288350 - Sequence 269374 from Patent EP1572962.
JD112618 - Sequence 93642 from Patent EP1572962.
JD502762 - Sequence 483786 from Patent EP1572962.
JD432961 - Sequence 413985 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RDG8, C10orf3, CEP55_HUMAN, NM_001127182, NP_060601, Q32WF5, Q3MV20, Q53EZ4, Q5VY28, Q6N034, Q96H32, Q9NVS7, URCC6
UCSC ID: uc009xug.3
RefSeq Accession: NM_001127182
Protein: Q53EZ4 (aka CEP55_HUMAN)
CCDS: CCDS7428.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001127182.1
exon count: 9CDS single in 3' UTR: no RNA size: 2534
ORF size: 1395CDS single in intron: no Alignment % ID: 99.96
txCdsPredict score: 2981.00frame shift in genome: no % Coverage: 99.29
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.