Human Gene U73166.2 (uc003cys.1)
  Description: Homo sapiens cDNA clone IMAGE:4822684.
Transcript (Including UTRs)
   Position: hg19 chr3:50,297,735-50,300,789 Size: 3,055 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:50,297,735-50,300,789)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.47 RPKM in Testis
Total median expression: 46.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC033528 - Homo sapiens cDNA clone IMAGE:4822684.
KX533491 - Homo sapiens semaphorin-3B (SEMA3B) mRNA, complete cds.
JD076546 - Sequence 57570 from Patent EP1572962.
JD329413 - Sequence 310437 from Patent EP1572962.
AK125074 - Homo sapiens cDNA FLJ43084 fis, clone BRTHA3018617.
JD176031 - Sequence 157055 from Patent EP1572962.
JD427227 - Sequence 408251 from Patent EP1572962.
JD131805 - Sequence 112829 from Patent EP1572962.
JD454298 - Sequence 435322 from Patent EP1572962.
JD436887 - Sequence 417911 from Patent EP1572962.
JD516524 - Sequence 497548 from Patent EP1572962.
JD156300 - Sequence 137324 from Patent EP1572962.
JD162219 - Sequence 143243 from Patent EP1572962.
JD466404 - Sequence 447428 from Patent EP1572962.
JD441925 - Sequence 422949 from Patent EP1572962.
JD157056 - Sequence 138080 from Patent EP1572962.
JD215817 - Sequence 196841 from Patent EP1572962.
JD301952 - Sequence 282976 from Patent EP1572962.
JD117746 - Sequence 98770 from Patent EP1572962.
JD311247 - Sequence 292271 from Patent EP1572962.
JD241653 - Sequence 222677 from Patent EP1572962.
JD527175 - Sequence 508199 from Patent EP1572962.
JD381388 - Sequence 362412 from Patent EP1572962.
JD129967 - Sequence 110991 from Patent EP1572962.
JD043503 - Sequence 24527 from Patent EP1572962.
JD425561 - Sequence 406585 from Patent EP1572962.
JD047569 - Sequence 28593 from Patent EP1572962.
JD412130 - Sequence 393154 from Patent EP1572962.
JD324414 - Sequence 305438 from Patent EP1572962.
JD514885 - Sequence 495909 from Patent EP1572962.
JD481537 - Sequence 462561 from Patent EP1572962.
JD256980 - Sequence 238004 from Patent EP1572962.
JD084356 - Sequence 65380 from Patent EP1572962.
JD247771 - Sequence 228795 from Patent EP1572962.
JD326812 - Sequence 307836 from Patent EP1572962.
JD523742 - Sequence 504766 from Patent EP1572962.
JD201261 - Sequence 182285 from Patent EP1572962.
JD430142 - Sequence 411166 from Patent EP1572962.
JD557312 - Sequence 538336 from Patent EP1572962.
JD557311 - Sequence 538335 from Patent EP1572962.
JD529127 - Sequence 510151 from Patent EP1572962.
JD529126 - Sequence 510150 from Patent EP1572962.
JD169208 - Sequence 150232 from Patent EP1572962.
JD169210 - Sequence 150234 from Patent EP1572962.
JD169209 - Sequence 150233 from Patent EP1572962.
JD041237 - Sequence 22261 from Patent EP1572962.
JD320994 - Sequence 302018 from Patent EP1572962.
JD388040 - Sequence 369064 from Patent EP1572962.
JD118203 - Sequence 99227 from Patent EP1572962.
JD561428 - Sequence 542452 from Patent EP1572962.
JD281995 - Sequence 263019 from Patent EP1572962.
JD230093 - Sequence 211117 from Patent EP1572962.
JD269671 - Sequence 250695 from Patent EP1572962.
JD367036 - Sequence 348060 from Patent EP1572962.
JD158396 - Sequence 139420 from Patent EP1572962.
JD089910 - Sequence 70934 from Patent EP1572962.
JD497840 - Sequence 478864 from Patent EP1572962.
JD543373 - Sequence 524397 from Patent EP1572962.
JD478653 - Sequence 459677 from Patent EP1572962.
JD463901 - Sequence 444925 from Patent EP1572962.
JD148384 - Sequence 129408 from Patent EP1572962.
JD340157 - Sequence 321181 from Patent EP1572962.
JD065992 - Sequence 47016 from Patent EP1572962.
JD469631 - Sequence 450655 from Patent EP1572962.
JD531205 - Sequence 512229 from Patent EP1572962.
JD139660 - Sequence 120684 from Patent EP1572962.
JD424809 - Sequence 405833 from Patent EP1572962.
JD147585 - Sequence 128609 from Patent EP1572962.
JD327717 - Sequence 308741 from Patent EP1572962.
JD432499 - Sequence 413523 from Patent EP1572962.
JD472463 - Sequence 453487 from Patent EP1572962.
JD479486 - Sequence 460510 from Patent EP1572962.
JD178594 - Sequence 159618 from Patent EP1572962.
JD430239 - Sequence 411263 from Patent EP1572962.
JD529279 - Sequence 510303 from Patent EP1572962.
JD169428 - Sequence 150452 from Patent EP1572962.
JD499694 - Sequence 480718 from Patent EP1572962.
JD499695 - Sequence 480719 from Patent EP1572962.
JD286910 - Sequence 267934 from Patent EP1572962.
JD286912 - Sequence 267936 from Patent EP1572962.
JD511718 - Sequence 492742 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC033528
UCSC ID: uc003cys.1
Representative RNA: BC033528

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC033528.1
exon count: 2CDS single in 3' UTR: no RNA size: 2638
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 601.00frame shift in genome: no % Coverage: 99.36
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.