Human Gene FAM110D (uc001blk.3)
Description: Homo sapiens family with sequence similarity 110, member D (FAM110D), mRNA.
Transcript (Including UTRs)
Position: hg19 chr1:26,485,511-26,489,119 Size: 3,609 Total Exon Count: 2 Strand: +
Coding Region
Position: hg19 chr1:26,487,783-26,488,598 Size: 816 Coding Exon Count: 1
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: F110D_HUMAN
DESCRIPTION: RecName: Full=Protein FAM110D;
SIMILARITY: Belongs to the FAM110 family.SEQUENCE CAUTION: Sequence=BAB14829.1; Type=Frameshift; Positions=90;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR025740 - FAM110
IPR025741 - FAM110_C
IPR025739 - FAM110_N
Pfam Domains: PF14160 - Centrosome-associated C terminus
PF14161 - Centrosome-associated N terminus
ModBase Predicted Comparative 3D Structure on Q8TAY7
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK024112 - Homo sapiens cDNA FLJ14050 fis, clone HEMBA1006796.BC025658 - Homo sapiens glycine/arginine rich protein 1, mRNA (cDNA clone MGC:34152 IMAGE:5198480), complete cds.JD079947 - Sequence 60971 from Patent EP1572962.LF206663 - JP 2014500723-A/14166: Polycomb-Associated Non-Coding RNAs.JD431961 - Sequence 412985 from Patent EP1572962.JD546976 - Sequence 528000 from Patent EP1572962.AK290715 - Homo sapiens cDNA FLJ76134 complete cds, highly similar to Homo sapiens glycine/arginine rich protein 1, mRNA.JD134576 - Sequence 115600 from Patent EP1572962.JD076001 - Sequence 57025 from Patent EP1572962.JD476909 - Sequence 457933 from Patent EP1572962.LF212987 - JP 2014500723-A/20490: Polycomb-Associated Non-Coding RNAs.JD319725 - Sequence 300749 from Patent EP1572962.KJ899594 - Synthetic construct Homo sapiens clone ccsbBroadEn_08988 FAM110D gene, encodes complete protein.JD167428 - Sequence 148452 from Patent EP1572962.JD100309 - Sequence 81333 from Patent EP1572962.LF356981 - JP 2014500723-A/164484: Polycomb-Associated Non-Coding RNAs.JD314057 - Sequence 295081 from Patent EP1572962.JD231620 - Sequence 212644 from Patent EP1572962.JD549208 - Sequence 530232 from Patent EP1572962.JD125492 - Sequence 106516 from Patent EP1572962.JD401991 - Sequence 383015 from Patent EP1572962.MA442240 - JP 2018138019-A/14166: Polycomb-Associated Non-Coding RNAs.MA448564 - JP 2018138019-A/20490: Polycomb-Associated Non-Coding RNAs.MA592558 - JP 2018138019-A/164484: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: A8K3V0, F110D_HUMAN, GRRP1, NM_024869, NP_079145, Q8TAY7, Q9H7Z4UCSC ID: uc001blk.3RefSeq Accession: NM_024869
Protein: Q8TAY7
(aka F110D_HUMAN)
CCDS: CCDS41285.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_024869.2
exon count:
2 CDS single in 3' UTR:
no
RNA size:
1568
ORF size:
816 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1450.50 frame shift in genome:
no
% Coverage:
97.19
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.