Human Gene CT62 (uc002ata.2)
  Description: Homo sapiens cancer/testis antigen 62 (CT62), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr15:71,402,583-71,407,839 Size: 5,257 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr15:71,403,490-71,404,621 Size: 1,132 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:71,402,583-71,407,839)mRNA (may differ from genome)Protein (136 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsGeneNetworkH-INV
HGNCHPRDLynxMGIneXtProtPubMed
UniProtKB

-  Comments and Description Text from UniProtKB
  ID: CT62_HUMAN
DESCRIPTION: RecName: Full=Cancer/testis antigen 62; Short=CT62;
TISSUE SPECIFICITY: Testis specific. Expressed in cancer cell lines.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 21.87 RPKM in Testis
Total median expression: 23.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -219.50513-0.428 Picture PostScript Text
3' UTR -309.11907-0.341 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on P0C5K7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC048128 - Homo sapiens hypothetical protein LOC196993, mRNA (cDNA clone IMAGE:5272859).
AL080151 - Homo sapiens mRNA; cDNA DKFZp434D024 (from clone DKFZp434D024).
BC039359 - Homo sapiens hypothetical protein LOC196993, mRNA (cDNA clone IMAGE:5270245).
JD549759 - Sequence 530783 from Patent EP1572962.
JD195575 - Sequence 176599 from Patent EP1572962.
JD394426 - Sequence 375450 from Patent EP1572962.
JD336032 - Sequence 317056 from Patent EP1572962.
JD363391 - Sequence 344415 from Patent EP1572962.
JD540451 - Sequence 521475 from Patent EP1572962.
JD062682 - Sequence 43706 from Patent EP1572962.
JD477772 - Sequence 458796 from Patent EP1572962.
JD233193 - Sequence 214217 from Patent EP1572962.
JD107192 - Sequence 88216 from Patent EP1572962.
JD080871 - Sequence 61895 from Patent EP1572962.
JD219711 - Sequence 200735 from Patent EP1572962.
JD441325 - Sequence 422349 from Patent EP1572962.
JD436246 - Sequence 417270 from Patent EP1572962.
JD253994 - Sequence 235018 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CT62_HUMAN, NM_001102658, NP_001096128, P0C5K7
UCSC ID: uc002ata.2
RefSeq Accession: NM_001102658
Protein: P0C5K7 (aka CT62_HUMAN)
CCDS: CCDS45295.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001102658.1
exon count: 4CDS single in 3' UTR: no RNA size: 1842
ORF size: 411CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 779.00frame shift in genome: no % Coverage: 99.40
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.