The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on P0C5K7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
BC048128 - Homo sapiens hypothetical protein LOC196993, mRNA (cDNA clone IMAGE:5272859). AL080151 - Homo sapiens mRNA; cDNA DKFZp434D024 (from clone DKFZp434D024). BC039359 - Homo sapiens hypothetical protein LOC196993, mRNA (cDNA clone IMAGE:5270245). JD549759 - Sequence 530783 from Patent EP1572962. JD195575 - Sequence 176599 from Patent EP1572962. JD394426 - Sequence 375450 from Patent EP1572962. JD336032 - Sequence 317056 from Patent EP1572962. JD363391 - Sequence 344415 from Patent EP1572962. JD540451 - Sequence 521475 from Patent EP1572962. JD062682 - Sequence 43706 from Patent EP1572962. JD477772 - Sequence 458796 from Patent EP1572962. JD233193 - Sequence 214217 from Patent EP1572962. JD107192 - Sequence 88216 from Patent EP1572962. JD080871 - Sequence 61895 from Patent EP1572962. JD219711 - Sequence 200735 from Patent EP1572962. JD441325 - Sequence 422349 from Patent EP1572962. JD436246 - Sequence 417270 from Patent EP1572962. JD253994 - Sequence 235018 from Patent EP1572962.