Human Gene SNORD38B (uc001cml.3)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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LP896813 - Sequence 1677 from Patent EP3253886. X97583 - H.sapiens small nucleolar RNA U38b. HI965624 - Sequence 909 from Patent WO2010139812. JA401662 - Sequence 909 from Patent WO2011080318. JA402640 - Sequence 909 from Patent WO2011080315. JA403647 - Sequence 909 from Patent WO2011080316. JA406278 - Sequence 909 from Patent EP2336353. JA429804 - Sequence 909 from Patent WO2011095623. MS834763 - Sequence 909 from Patent EP3112479. JC506923 - Sequence 291 from Patent EP2733220. JC738035 - Sequence 291 from Patent WO2014075939. DQ571419 - Homo sapiens piRNA piR-31531, complete sequence. LQ980361 - Sequence 7 from Patent WO2013050532.
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Other Names for This Gene
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Alternate Gene Symbols: NR_001457 UCSC ID: uc001cml.3 RefSeq Accession: NR_001457
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Gene Model Information
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category:
| noncoding
| nonsense-mediated-decay:
| no
| RNA accession:
| NR_001457.1
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exon count:
| 1 | CDS single in 3' UTR:
| no
| RNA size:
| 69 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| 278.00 | frame shift in genome:
| no
| % Coverage:
| 100.00 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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