Human Gene CSPG4P8 (uc021ssx.1) Description and Page Index
  Description: Homo sapiens chondroitin sulfate proteoglycan 4 pseudogene 8 (CSPG4P8), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr15:82,970,479-82,986,427 Size: 15,949 Total Exon Count: 12 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:82,970,479-82,986,427)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.06 RPKM in Ovary
Total median expression: 0.64 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK125436 - Homo sapiens cDNA FLJ43447 fis, clone OCBBF2032590, weakly similar to H.sapiens mRNA for melanoma-associated chondroitin sulfate proteoglycan.
DQ601277 - Homo sapiens piRNA piR-39343, complete sequence.
DQ597149 - Homo sapiens piRNA piR-35215, complete sequence.
DQ583799 - Homo sapiens piRNA piR-50911, complete sequence.
DQ599932 - Homo sapiens piRNA piR-37998, complete sequence.
DQ592820 - Homo sapiens piRNA piR-59932, complete sequence.
JD416574 - Sequence 397598 from Patent EP1572962.
DQ589692 - Homo sapiens piRNA piR-56804, complete sequence.
JD157470 - Sequence 138494 from Patent EP1572962.
JD271021 - Sequence 252045 from Patent EP1572962.
JD520607 - Sequence 501631 from Patent EP1572962.
DQ590242 - Homo sapiens piRNA piR-57354, complete sequence.
DQ591667 - Homo sapiens piRNA piR-58779, complete sequence.
DQ592149 - Homo sapiens piRNA piR-59261, complete sequence.
DQ583427 - Homo sapiens piRNA piR-50539, complete sequence.
DQ579820 - Homo sapiens piRNA piR-47932, complete sequence.
DQ593360 - Homo sapiens piRNA piR-33472, complete sequence.
DQ588344 - Homo sapiens piRNA piR-55456, complete sequence.
JD371160 - Sequence 352184 from Patent EP1572962.
JD324351 - Sequence 305375 from Patent EP1572962.
JD101468 - Sequence 82492 from Patent EP1572962.
JD050475 - Sequence 31499 from Patent EP1572962.
JD083334 - Sequence 64358 from Patent EP1572962.
JD127604 - Sequence 108628 from Patent EP1572962.
JD389706 - Sequence 370730 from Patent EP1572962.
JD240134 - Sequence 221158 from Patent EP1572962.
DQ600316 - Homo sapiens piRNA piR-38382, complete sequence.
JD339164 - Sequence 320188 from Patent EP1572962.
JD432352 - Sequence 413376 from Patent EP1572962.
JD335010 - Sequence 316034 from Patent EP1572962.
JD254222 - Sequence 235246 from Patent EP1572962.
JD383912 - Sequence 364936 from Patent EP1572962.
JD320907 - Sequence 301931 from Patent EP1572962.
JD383911 - Sequence 364935 from Patent EP1572962.
JD338552 - Sequence 319576 from Patent EP1572962.
JD371947 - Sequence 352971 from Patent EP1572962.
JD554223 - Sequence 535247 from Patent EP1572962.
JD179033 - Sequence 160057 from Patent EP1572962.
JD554222 - Sequence 535246 from Patent EP1572962.
JD159204 - Sequence 140228 from Patent EP1572962.
JD386661 - Sequence 367685 from Patent EP1572962.
JD210087 - Sequence 191111 from Patent EP1572962.
JD450780 - Sequence 431804 from Patent EP1572962.
JD131760 - Sequence 112784 from Patent EP1572962.
JD275112 - Sequence 256136 from Patent EP1572962.
JD476581 - Sequence 457605 from Patent EP1572962.
JD424411 - Sequence 405435 from Patent EP1572962.
DQ587662 - Homo sapiens piRNA piR-54774, complete sequence.
JD044292 - Sequence 25316 from Patent EP1572962.
JD372735 - Sequence 353759 from Patent EP1572962.
JD218730 - Sequence 199754 from Patent EP1572962.
JD103894 - Sequence 84918 from Patent EP1572962.
JD265570 - Sequence 246594 from Patent EP1572962.
JD455613 - Sequence 436637 from Patent EP1572962.
JD132884 - Sequence 113908 from Patent EP1572962.
JD264301 - Sequence 245325 from Patent EP1572962.
JD211529 - Sequence 192553 from Patent EP1572962.
JD516348 - Sequence 497372 from Patent EP1572962.
JD402823 - Sequence 383847 from Patent EP1572962.
JD323532 - Sequence 304556 from Patent EP1572962.
JD218619 - Sequence 199643 from Patent EP1572962.
JD076996 - Sequence 58020 from Patent EP1572962.
JD499965 - Sequence 480989 from Patent EP1572962.
JD266575 - Sequence 247599 from Patent EP1572962.
JD471460 - Sequence 452484 from Patent EP1572962.
JD400587 - Sequence 381611 from Patent EP1572962.
JD400607 - Sequence 381631 from Patent EP1572962.
JD115004 - Sequence 96028 from Patent EP1572962.
JD210762 - Sequence 191786 from Patent EP1572962.
JD039656 - Sequence 20680 from Patent EP1572962.
JD187682 - Sequence 168706 from Patent EP1572962.
JD427805 - Sequence 408829 from Patent EP1572962.
DQ596608 - Homo sapiens piRNA piR-34674, complete sequence.
JD531928 - Sequence 512952 from Patent EP1572962.
JD047925 - Sequence 28949 from Patent EP1572962.
JD176856 - Sequence 157880 from Patent EP1572962.
JD282611 - Sequence 263635 from Patent EP1572962.
JD288867 - Sequence 269891 from Patent EP1572962.
JD097290 - Sequence 78314 from Patent EP1572962.
JD466845 - Sequence 447869 from Patent EP1572962.
JD218528 - Sequence 199552 from Patent EP1572962.
JD485191 - Sequence 466215 from Patent EP1572962.
JD444452 - Sequence 425476 from Patent EP1572962.
JD288071 - Sequence 269095 from Patent EP1572962.
JD199934 - Sequence 180958 from Patent EP1572962.
JD141710 - Sequence 122734 from Patent EP1572962.
JD108794 - Sequence 89818 from Patent EP1572962.
JD457613 - Sequence 438637 from Patent EP1572962.
JD385561 - Sequence 366585 from Patent EP1572962.
JD127689 - Sequence 108713 from Patent EP1572962.
JD056099 - Sequence 37123 from Patent EP1572962.
JD097153 - Sequence 78177 from Patent EP1572962.
JD052857 - Sequence 33881 from Patent EP1572962.
JD048560 - Sequence 29584 from Patent EP1572962.
JD232390 - Sequence 213414 from Patent EP1572962.
JD534017 - Sequence 515041 from Patent EP1572962.
JD303056 - Sequence 284080 from Patent EP1572962.
JD533542 - Sequence 514566 from Patent EP1572962.
JD457826 - Sequence 438850 from Patent EP1572962.
JD222703 - Sequence 203727 from Patent EP1572962.
JD220466 - Sequence 201490 from Patent EP1572962.
JD139071 - Sequence 120095 from Patent EP1572962.
JD221432 - Sequence 202456 from Patent EP1572962.
JD371875 - Sequence 352899 from Patent EP1572962.
JD298312 - Sequence 279336 from Patent EP1572962.
JD073218 - Sequence 54242 from Patent EP1572962.
JD510771 - Sequence 491795 from Patent EP1572962.
JD463508 - Sequence 444532 from Patent EP1572962.
JD110978 - Sequence 92002 from Patent EP1572962.
JD248969 - Sequence 229993 from Patent EP1572962.
JD069085 - Sequence 50109 from Patent EP1572962.
JD518437 - Sequence 499461 from Patent EP1572962.
JD402219 - Sequence 383243 from Patent EP1572962.
JD195329 - Sequence 176353 from Patent EP1572962.
JD452897 - Sequence 433921 from Patent EP1572962.
JD400697 - Sequence 381721 from Patent EP1572962.
JD325655 - Sequence 306679 from Patent EP1572962.
JD213764 - Sequence 194788 from Patent EP1572962.
JD124374 - Sequence 105398 from Patent EP1572962.
JD174205 - Sequence 155229 from Patent EP1572962.
JD465162 - Sequence 446186 from Patent EP1572962.
JD477339 - Sequence 458363 from Patent EP1572962.
JD277989 - Sequence 259013 from Patent EP1572962.
JD425651 - Sequence 406675 from Patent EP1572962.
JD402057 - Sequence 383081 from Patent EP1572962.
JD492685 - Sequence 473709 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_033579
UCSC ID: uc021ssx.1
RefSeq Accession: NR_033579

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_033579.1
exon count: 12CDS single in 3' UTR: no RNA size: 6807
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 333.50frame shift in genome: no % Coverage: 99.99
has start codon: no stop codon in genome: no # of Alignments: 3
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.