Human Gene FAM156B (uc004drl.3)
Description: Homo sapiens family with sequence similarity 156, member A (FAM156B), transcript variant 4, mRNA.
Transcript (Including UTRs)
Position: hg19 chrX:52,928,085-52,937,585 Size: 9,501 Total Exon Count: 3 Strand: +
Coding Region
Position: hg19 chrX:52,936,253-52,936,894 Size: 642 Coding Exon Count: 1
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: FA156_HUMAN
DESCRIPTION: RecName: Full=Protein FAM156A/FAM156B; AltName: Full=Transmembrane protein 29;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential).SEQUENCE CAUTION: Sequence=AAF24055.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH00867.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF15549 - PGC7/Stella/Dppa3 domain
ModBase Predicted Comparative 3D Structure on Q8NDB6
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK057692 - Homo sapiens cDNA FLJ33130 fis, clone UMVEN1000122, highly similar to Transmembrane protein 29.BX649013 - Homo sapiens mRNA; cDNA DKFZp686H1294 (from clone DKFZp686H1294).AK091598 - Homo sapiens cDNA FLJ34279 fis, clone FEBRA2003833, highly similar to Transmembrane protein 29.AX747084 - Sequence 609 from Patent EP1308459.AK092365 - Homo sapiens cDNA FLJ35046 fis, clone OCBBF2017791, highly similar to Transmembrane protein 29.AX747504 - Sequence 1029 from Patent EP1308459.AK096162 - Homo sapiens cDNA FLJ38843 fis, clone MESAN2003646, highly similar to Transmembrane protein 29.AF370413 - Homo sapiens PP12994 mRNA, complete cds.JD308309 - Sequence 289333 from Patent EP1572962.AL834135 - Homo sapiens mRNA; cDNA DKFZp667C0711 (from clone DKFZp667C0711); complete cds.JD347145 - Sequence 328169 from Patent EP1572962.JD278089 - Sequence 259113 from Patent EP1572962.JD216735 - Sequence 197759 from Patent EP1572962.JD210816 - Sequence 191840 from Patent EP1572962.JD566039 - Sequence 547063 from Patent EP1572962.JD166007 - Sequence 147031 from Patent EP1572962.JD498669 - Sequence 479693 from Patent EP1572962.AK054721 - Homo sapiens cDNA FLJ30159 fis, clone BRACE2000526.JD223596 - Sequence 204620 from Patent EP1572962.JD260249 - Sequence 241273 from Patent EP1572962.JD518261 - Sequence 499285 from Patent EP1572962.JD117854 - Sequence 98878 from Patent EP1572962.JD139023 - Sequence 120047 from Patent EP1572962.AB464316 - Synthetic construct DNA, clone: pF1KB7101, Homo sapiens TMEM29 gene for transmembrane protein 29, without stop codon, in Flexi system.AM393186 - Synthetic construct Homo sapiens clone IMAGE:100001847 for hypothetical protein (TMEM29 gene).AF090943 - Homo sapiens clone HQ0659 PRO0659 mRNA, complete cds.BC000867 - Homo sapiens family with sequence similarity 156, member A, mRNA (cDNA clone MGC:4888 IMAGE:3460178), complete cds.JD037480 - Sequence 18504 from Patent EP1572962.JD369860 - Sequence 350884 from Patent EP1572962.JD252087 - Sequence 233111 from Patent EP1572962.JD482213 - Sequence 463237 from Patent EP1572962.JD251532 - Sequence 232556 from Patent EP1572962.JD282473 - Sequence 263497 from Patent EP1572962.JD409102 - Sequence 390126 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: B3KQ92, FA156_HUMAN, FAM156A, NM_001099684, NP_054857, PP12994, PRO0659, Q5JPL2, Q5JPL3, Q5JPL4, Q5JPL5, Q5JPL6, Q68D17, Q6NVY3, Q8NDB6, Q9UI49, TMEM29, TMEM29BUCSC ID: uc004drl.3RefSeq Accession: NM_001099684
Protein: Q8NDB6
(aka FA156_HUMAN)
CCDS: CCDS43957.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001099684.1
exon count:
3 CDS single in 3' UTR:
no
RNA size:
1701
ORF size:
642 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1142.00 frame shift in genome:
no
% Coverage:
99.88
has start codon:
yes
stop codon in genome:
no
# of Alignments:
2
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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