Human Gene LOC100287846 (uc003xqc.2) Description and Page Index
  Description: Homo sapiens patched 1 pseudogene (LOC100287846), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr8:48,100,930-48,104,439 Size: 3,510 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:48,100,930-48,104,439)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerH-INVLynxPubMed
Stanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.17 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 57.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK090892 - Homo sapiens cDNA FLJ33573 fis, clone BRAMY2010798.
AX746665 - Sequence 190 from Patent EP1308459.
JD434980 - Sequence 416004 from Patent EP1572962.
JD401761 - Sequence 382785 from Patent EP1572962.
JD401762 - Sequence 382786 from Patent EP1572962.
JD176452 - Sequence 157476 from Patent EP1572962.
JD176453 - Sequence 157477 from Patent EP1572962.
JD531842 - Sequence 512866 from Patent EP1572962.
JD531843 - Sequence 512867 from Patent EP1572962.
JD066650 - Sequence 47674 from Patent EP1572962.
JD066651 - Sequence 47675 from Patent EP1572962.
JD284857 - Sequence 265881 from Patent EP1572962.
JD237648 - Sequence 218672 from Patent EP1572962.
JD501634 - Sequence 482658 from Patent EP1572962.
JD301252 - Sequence 282276 from Patent EP1572962.
JD299020 - Sequence 280044 from Patent EP1572962.
JD220126 - Sequence 201150 from Patent EP1572962.
JD334606 - Sequence 315630 from Patent EP1572962.
JD036441 - Sequence 17465 from Patent EP1572962.
JD284091 - Sequence 265115 from Patent EP1572962.
JD202589 - Sequence 183613 from Patent EP1572962.
JD381499 - Sequence 362523 from Patent EP1572962.
JD092486 - Sequence 73510 from Patent EP1572962.
JD280474 - Sequence 261498 from Patent EP1572962.
JD074035 - Sequence 55059 from Patent EP1572962.
JD280691 - Sequence 261715 from Patent EP1572962.
JD363628 - Sequence 344652 from Patent EP1572962.
JD257822 - Sequence 238846 from Patent EP1572962.
JD507093 - Sequence 488117 from Patent EP1572962.
JD172425 - Sequence 153449 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_037168
UCSC ID: uc003xqc.2
RefSeq Accession: NR_037168

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_037168.1
exon count: 1CDS single in 3' UTR: no RNA size: 3510
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 439.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.